Strain Fitness in Variovorax sp. SCN45 around GFF3731

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3730 and GFF3731 are separated by 76 nucleotidesGFF3731 and GFF3732 are separated by 11 nucleotidesGFF3732 and GFF3733 are separated by 98 nucleotides GFF3730 - Integral membrane protein, at 228,472 to 229,290 GFF3730 GFF3731 - Glutathione S-transferase, at 229,367 to 230,095 GFF3731 GFF3732 - hypothetical protein, at 230,107 to 230,604 GFF3732 GFF3733 - no description, at 230,703 to 231,599 GFF3733 Position (kb) 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 228.393 kb on + strandat 228.393 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.433 kb on + strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.434 kb on - strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.481 kb on + strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.482 kb on - strandat 228.823 kb on + strand, within GFF3730at 228.824 kb on - strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.081 kb on + strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.082 kb on - strand, within GFF3730at 229.244 kb on - strandat 229.373 kb on + strandat 229.373 kb on + strandat 229.385 kb on + strandat 229.385 kb on + strandat 229.451 kb on + strand, within GFF3731at 229.451 kb on + strand, within GFF3731at 229.451 kb on + strand, within GFF3731at 229.452 kb on - strand, within GFF3731at 229.607 kb on + strand, within GFF3731at 229.608 kb on - strand, within GFF3731at 229.608 kb on - strand, within GFF3731at 229.608 kb on - strand, within GFF3731at 229.608 kb on - strand, within GFF3731at 229.742 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.883 kb on + strand, within GFF3731at 229.884 kb on - strand, within GFF3731at 229.884 kb on - strand, within GFF3731at 229.884 kb on - strand, within GFF3731at 229.884 kb on - strand, within GFF3731at 230.021 kb on + strand, within GFF3731at 230.075 kb on + strandat 230.075 kb on + strandat 230.075 kb on + strandat 230.094 kb on - strandat 230.195 kb on + strand, within GFF3732at 230.195 kb on + strand, within GFF3732at 230.641 kb on + strandat 230.641 kb on + strandat 230.667 kb on + strandat 230.667 kb on + strandat 230.667 kb on + strandat 230.667 kb on + strandat 230.700 kb on + strandat 230.859 kb on + strand, within GFF3733at 230.859 kb on + strand, within GFF3733at 231.015 kb on + strand, within GFF3733at 231.015 kb on + strand, within GFF3733at 231.016 kb on - strand, within GFF3733at 231.021 kb on + strand, within GFF3733at 231.021 kb on + strand, within GFF3733at 231.022 kb on - strand, within GFF3733at 231.022 kb on - strand, within GFF3733at 231.022 kb on - strand, within GFF3733at 231.022 kb on - strand, within GFF3733at 231.022 kb on - strand, within GFF3733at 231.022 kb on - strand, within GFF3733

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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228,393 + +2.0
228,393 + +2.0
228,433 + -0.2
228,433 + +0.7
228,433 + +2.8
228,433 + -0.2
228,433 + -2.6
228,433 + -0.9
228,434 - +2.0
228,434 - -1.9
228,434 - -0.6
228,434 - -0.4
228,434 - -1.7
228,434 - -0.9
228,481 + -2.3
228,481 + +0.7
228,481 + -1.5
228,481 + +1.3
228,481 + +2.0
228,481 + -3.7
228,481 + +1.4
228,481 + -0.9
228,482 - -1.2
228,482 - +0.3
228,482 - -0.6
228,482 - -0.7
228,482 - -0.4
228,482 - +0.7
228,823 + GFF3730 0.43 -0.5
228,824 - GFF3730 0.43 +0.2
229,081 + GFF3730 0.74 +0.4
229,081 + GFF3730 0.74 -2.3
229,081 + GFF3730 0.74 +0.6
229,081 + GFF3730 0.74 +0.3
229,081 + GFF3730 0.74 -0.9
229,082 - GFF3730 0.74 +0.9
229,082 - GFF3730 0.74 -0.5
229,082 - GFF3730 0.74 +1.0
229,082 - GFF3730 0.74 +3.4
229,082 - GFF3730 0.74 +0.1
229,082 - GFF3730 0.74 -0.3
229,082 - GFF3730 0.74 -0.9
229,082 - GFF3730 0.74 -0.4
229,082 - GFF3730 0.74 -0.8
229,082 - GFF3730 0.74 +1.3
229,244 - +0.1
229,373 + +0.9
229,373 + -2.0
229,385 + +2.9
229,385 + +1.0
229,451 + GFF3731 0.12 +0.1
229,451 + GFF3731 0.12 +0.3
229,451 + GFF3731 0.12 +1.7
229,452 - GFF3731 0.12 -2.1
229,607 + GFF3731 0.33 -1.0
229,608 - GFF3731 0.33 -1.0
229,608 - GFF3731 0.33 -3.6
229,608 - GFF3731 0.33 -3.1
229,608 - GFF3731 0.33 -0.0
229,742 + GFF3731 0.51 +0.5
229,883 + GFF3731 0.71 +0.4
229,883 + GFF3731 0.71 -0.1
229,883 + GFF3731 0.71 -2.6
229,883 + GFF3731 0.71 +1.4
229,883 + GFF3731 0.71 +1.4
229,883 + GFF3731 0.71 +0.9
229,883 + GFF3731 0.71 -0.4
229,884 - GFF3731 0.71 +1.5
229,884 - GFF3731 0.71 +1.6
229,884 - GFF3731 0.71 -1.9
229,884 - GFF3731 0.71 +0.3
230,021 + GFF3731 0.90 +0.1
230,075 + -0.0
230,075 + -0.6
230,075 + +0.7
230,094 - -3.7
230,195 + GFF3732 0.18 -2.0
230,195 + GFF3732 0.18 -0.9
230,641 + -1.2
230,641 + +0.2
230,667 + +0.7
230,667 + +0.6
230,667 + +1.6
230,667 + -0.4
230,700 + -1.8
230,859 + GFF3733 0.17 -1.9
230,859 + GFF3733 0.17 +2.4
231,015 + GFF3733 0.35 -0.7
231,015 + GFF3733 0.35 +0.2
231,016 - GFF3733 0.35 +0.1
231,021 + GFF3733 0.35 +0.0
231,021 + GFF3733 0.35 +0.6
231,022 - GFF3733 0.36 -2.0
231,022 - GFF3733 0.36 -0.9
231,022 - GFF3733 0.36 -1.6
231,022 - GFF3733 0.36 -0.1
231,022 - GFF3733 0.36 -0.4
231,022 - GFF3733 0.36 +1.0

Or see this region's nucleotide sequence