Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3676 and GFF3677 overlap by 4 nucleotides GFF3677 and GFF3678 overlap by 4 nucleotides GFF3678 and GFF3679 are separated by 157 nucleotides GFF3679 and GFF3680 are separated by 4 nucleotides
GFF3676 - Outer membrane protein romA, at 177,412 to 178,608
GFF3676
GFF3677 - Proposed lipoate regulatory protein YbeD, at 178,605 to 178,913
GFF3677
GFF3678 - D-alanine aminotransferase (EC 2.6.1.21), at 178,910 to 179,803
GFF3678
GFF3679 - ATP synthase protein I, at 179,961 to 180,446
GFF3679
GFF3680 - ATP synthase F0 sector subunit a (EC 3.6.3.14), at 180,451 to 181,320
GFF3680
Position (kb) 178
179
180 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 178.118 kb on + strand, within GFF3676 at 178.118 kb on + strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.150 kb on - strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.529 kb on + strand at 178.529 kb on + strand at 178.705 kb on + strand, within GFF3677 at 178.706 kb on - strand, within GFF3677 at 178.706 kb on - strand, within GFF3677 at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.959 kb on + strand at 178.960 kb on - strand at 178.960 kb on - strand at 178.960 kb on - strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 179.008 kb on + strand, within GFF3678 at 179.008 kb on + strand, within GFF3678 at 179.008 kb on + strand, within GFF3678 at 179.009 kb on - strand, within GFF3678 at 179.043 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.664 kb on + strand, within GFF3678 at 179.664 kb on + strand, within GFF3678 at 179.664 kb on + strand, within GFF3678 at 179.665 kb on - strand, within GFF3678 at 179.665 kb on - strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.748 kb on + strand at 179.748 kb on + strand at 179.749 kb on - strand at 179.749 kb on - strand at 179.749 kb on - strand at 179.763 kb on + strand at 179.763 kb on + strand at 179.763 kb on + strand at 179.764 kb on - strand at 179.794 kb on + strand at 179.795 kb on - strand at 179.795 kb on - strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.904 kb on + strand at 179.904 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.909 kb on - strand at 179.909 kb on - strand at 179.910 kb on + strand at 179.910 kb on + strand at 180.174 kb on + strand, within GFF3679
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 178,118 + GFF3676 0.59 +2.2 178,118 + GFF3676 0.59 +1.6 178,119 - GFF3676 0.59 +1.1 178,119 - GFF3676 0.59 -1.6 178,119 - GFF3676 0.59 -2.2 178,119 - GFF3676 0.59 -3.3 178,150 - GFF3676 0.62 +3.5 178,478 + GFF3676 0.89 -0.8 178,478 + GFF3676 0.89 -1.9 178,478 + GFF3676 0.89 -0.1 178,478 + GFF3676 0.89 -2.7 178,478 + GFF3676 0.89 -1.9 178,478 + GFF3676 0.89 +0.7 178,478 + GFF3676 0.89 -0.2 178,478 + GFF3676 0.89 -3.4 178,478 + GFF3676 0.89 -1.6 178,478 + GFF3676 0.89 -2.9 178,478 + GFF3676 0.89 +0.3 178,478 + GFF3676 0.89 +0.5 178,478 + GFF3676 0.89 -0.3 178,478 + GFF3676 0.89 -0.1 178,478 + GFF3676 0.89 -3.1 178,478 + GFF3676 0.89 +0.1 178,478 + GFF3676 0.89 -1.2 178,478 + GFF3676 0.89 +0.5 178,478 + GFF3676 0.89 -0.4 178,479 - GFF3676 0.89 +0.3 178,479 - GFF3676 0.89 -0.4 178,479 - GFF3676 0.89 +0.1 178,479 - GFF3676 0.89 -2.6 178,479 - GFF3676 0.89 -1.3 178,479 - GFF3676 0.89 +0.8 178,479 - GFF3676 0.89 -1.9 178,479 - GFF3676 0.89 +0.2 178,479 - GFF3676 0.89 -1.9 178,479 - GFF3676 0.89 -0.9 178,479 - GFF3676 0.89 +0.3 178,479 - GFF3676 0.89 -0.5 178,479 - GFF3676 0.89 -0.2 178,479 - GFF3676 0.89 +3.5 178,479 - GFF3676 0.89 -0.1 178,479 - GFF3676 0.89 +1.3 178,479 - GFF3676 0.89 -2.4 178,479 - GFF3676 0.89 +1.0 178,479 - GFF3676 0.89 -3.4 178,479 - GFF3676 0.89 -0.3 178,479 - GFF3676 0.89 +1.1 178,479 - GFF3676 0.89 +0.6 178,479 - GFF3676 0.89 -1.4 178,479 - GFF3676 0.89 -1.1 178,479 - GFF3676 0.89 -1.9 178,479 - GFF3676 0.89 -1.0 178,479 - GFF3676 0.89 -0.2 178,526 + +0.2 178,526 + +0.9 178,526 + +0.5 178,526 + -2.8 178,526 + -0.9 178,526 + +0.1 178,526 + -1.9 178,527 - -1.0 178,527 - -0.5 178,527 - -1.0 178,527 - -2.6 178,527 - -1.0 178,527 - +0.6 178,527 - +0.3 178,527 - -0.5 178,527 - -0.4 178,527 - -0.1 178,529 + -0.7 178,529 + -0.5 178,705 + GFF3677 0.32 -1.3 178,706 - GFF3677 0.33 -0.2 178,706 - GFF3677 0.33 +1.1 178,943 + -0.7 178,943 + +1.6 178,943 + +0.1 178,943 + -1.5 178,943 + -0.1 178,943 + -1.4 178,943 + +2.0 178,944 - -1.9 178,944 - -1.3 178,944 - -2.3 178,944 - +0.2 178,944 - -0.7 178,944 - -0.6 178,959 + +1.9 178,960 - +0.7 178,960 - -2.0 178,960 - -1.9 178,968 + +0.2 178,968 + -0.7 178,968 + +0.1 178,968 + -0.7 178,968 + +2.9 178,969 - -0.4 178,969 - -0.7 178,969 - -1.3 178,980 + -0.1 178,980 + -0.9 178,980 + +0.3 178,980 + -1.2 178,980 + +0.3 178,980 + +0.1 178,980 + -1.5 178,980 + -2.1 178,980 + -0.3 178,980 + -1.0 178,980 + -0.2 178,980 + +2.6 178,980 + -2.3 178,980 + +0.1 178,980 + -3.3 178,980 + -2.6 178,980 + -2.6 178,981 - -0.1 178,981 - +2.1 178,981 - -1.3 178,981 - -1.2 178,981 - +0.6 178,981 - +0.7 178,981 - +2.3 178,981 - -1.2 179,008 + GFF3678 0.11 -1.9 179,008 + GFF3678 0.11 -0.6 179,008 + GFF3678 0.11 -3.9 179,009 - GFF3678 0.11 -0.7 179,043 + GFF3678 0.15 +1.8 179,511 + GFF3678 0.67 -3.2 179,511 + GFF3678 0.67 -1.6 179,511 + GFF3678 0.67 -1.8 179,512 - GFF3678 0.67 +0.1 179,512 - GFF3678 0.67 +0.6 179,512 - GFF3678 0.67 +0.6 179,664 + GFF3678 0.84 -0.8 179,664 + GFF3678 0.84 -0.2 179,664 + GFF3678 0.84 +0.7 179,665 - GFF3678 0.84 +2.1 179,665 - GFF3678 0.84 -1.3 179,676 + GFF3678 0.86 -0.7 179,676 + GFF3678 0.86 +0.4 179,676 + GFF3678 0.86 +0.6 179,676 + GFF3678 0.86 -0.2 179,676 + GFF3678 0.86 +1.1 179,676 + GFF3678 0.86 +0.7 179,676 + GFF3678 0.86 +0.6 179,676 + GFF3678 0.86 +2.3 179,676 + GFF3678 0.86 -0.8 179,677 - GFF3678 0.86 -1.0 179,677 - GFF3678 0.86 +1.1 179,677 - GFF3678 0.86 -0.4 179,677 - GFF3678 0.86 -0.0 179,677 - GFF3678 0.86 +0.6 179,677 - GFF3678 0.86 -1.4 179,677 - GFF3678 0.86 +0.6 179,677 - GFF3678 0.86 -0.2 179,677 - GFF3678 0.86 -0.2 179,677 - GFF3678 0.86 -0.2 179,677 - GFF3678 0.86 +0.6 179,677 - GFF3678 0.86 -0.4 179,677 - GFF3678 0.86 +2.1 179,682 + GFF3678 0.86 -0.3 179,682 + GFF3678 0.86 -0.1 179,682 + GFF3678 0.86 +0.5 179,682 + GFF3678 0.86 +0.3 179,682 + GFF3678 0.86 -0.7 179,682 + GFF3678 0.86 -2.7 179,682 + GFF3678 0.86 -2.6 179,682 + GFF3678 0.86 -1.1 179,683 - GFF3678 0.86 -0.9 179,683 - GFF3678 0.86 -1.4 179,683 - GFF3678 0.86 -0.9 179,683 - GFF3678 0.86 +0.4 179,683 - GFF3678 0.86 +0.1 179,683 - GFF3678 0.86 +1.1 179,748 + -1.4 179,748 + -1.9 179,749 - -2.6 179,749 - +0.6 179,749 - -1.2 179,763 + -0.7 179,763 + +1.3 179,763 + +1.1 179,764 - +0.6 179,794 + +0.1 179,795 - +2.0 179,795 - -0.2 179,812 + +0.3 179,812 + -1.1 179,812 + +1.8 179,812 + -0.7 179,812 + -1.3 179,812 + -0.9 179,812 + -0.2 179,813 - -0.2 179,813 - +0.2 179,813 - +2.7 179,813 - -0.5 179,813 - -2.7 179,813 - -1.7 179,813 - -1.4 179,813 - +0.3 179,813 - +0.1 179,813 - +0.6 179,904 + -1.3 179,904 + -0.4 179,908 + -1.6 179,908 + -2.5 179,908 + +0.1 179,908 + -1.0 179,908 + -0.9 179,908 + +0.9 179,909 - -2.1 179,909 - +0.6 179,910 + +2.1 179,910 + +2.1 180,174 + GFF3679 0.44 +2.1
Or see this region's nucleotide sequence