Strain Fitness in Variovorax sp. SCN45 around GFF3585

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3583 and GFF3584 are separated by 40 nucleotidesGFF3584 and GFF3585 overlap by 23 nucleotidesGFF3585 and GFF3586 are separated by 23 nucleotides GFF3583 - AMP nucleosidase (EC 3.2.2.4), at 94,255 to 95,772 GFF3583 GFF3584 - hypothetical protein, at 95,813 to 96,334 GFF3584 GFF3585 - Sulfate transport system permease protein CysT, at 96,312 to 97,133 GFF3585 GFF3586 - ABC-type Fe3+ transport system, periplasmic component, at 97,157 to 98,236 GFF3586 Position (kb) 96 97 98Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 95.471 kb on + strand, within GFF3583at 95.471 kb on + strand, within GFF3583at 95.471 kb on + strand, within GFF3583at 95.472 kb on - strand, within GFF3583at 95.474 kb on + strand, within GFF3583at 95.475 kb on - strand, within GFF3583at 95.514 kb on - strand, within GFF3583at 95.609 kb on + strand, within GFF3583at 95.693 kb on + strandat 95.693 kb on + strandat 95.694 kb on - strandat 95.694 kb on - strandat 95.694 kb on - strandat 95.694 kb on - strandat 95.694 kb on - strandat 95.694 kb on - strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.765 kb on + strandat 95.766 kb on - strandat 95.766 kb on - strandat 95.815 kb on - strandat 95.815 kb on - strandat 96.204 kb on + strand, within GFF3584at 96.205 kb on - strand, within GFF3584at 96.354 kb on - strandat 96.514 kb on + strand, within GFF3585at 96.514 kb on + strand, within GFF3585at 96.514 kb on + strand, within GFF3585at 96.515 kb on - strand, within GFF3585at 96.515 kb on - strand, within GFF3585at 96.515 kb on - strand, within GFF3585at 96.515 kb on - strand, within GFF3585at 96.700 kb on + strand, within GFF3585at 96.700 kb on + strand, within GFF3585at 96.701 kb on - strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.703 kb on + strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.704 kb on - strand, within GFF3585at 96.709 kb on + strand, within GFF3585at 96.710 kb on - strand, within GFF3585at 96.710 kb on - strand, within GFF3585at 96.736 kb on + strand, within GFF3585at 96.736 kb on + strand, within GFF3585at 96.736 kb on + strand, within GFF3585at 96.737 kb on - strand, within GFF3585at 96.737 kb on - strand, within GFF3585at 96.737 kb on - strand, within GFF3585at 96.737 kb on - strand, within GFF3585at 97.158 kb on + strandat 97.158 kb on + strandat 97.159 kb on - strandat 97.413 kb on + strand, within GFF3586at 97.507 kb on - strand, within GFF3586at 97.548 kb on + strand, within GFF3586at 97.605 kb on + strand, within GFF3586at 97.606 kb on - strand, within GFF3586at 97.650 kb on + strand, within GFF3586at 97.651 kb on - strand, within GFF3586at 97.704 kb on + strand, within GFF3586at 97.704 kb on + strand, within GFF3586at 97.705 kb on - strand, within GFF3586at 97.705 kb on - strand, within GFF3586at 97.926 kb on + strand, within GFF3586at 97.926 kb on + strand, within GFF3586at 97.926 kb on + strand, within GFF3586at 97.926 kb on + strand, within GFF3586at 97.926 kb on + strand, within GFF3586at 97.927 kb on - strand, within GFF3586at 97.927 kb on - strand, within GFF3586at 97.927 kb on - strand, within GFF3586at 97.929 kb on + strand, within GFF3586at 97.929 kb on + strand, within GFF3586at 97.929 kb on + strand, within GFF3586at 97.930 kb on - strand, within GFF3586at 97.930 kb on - strand, within GFF3586at 98.004 kb on + strand, within GFF3586at 98.005 kb on - strand, within GFF3586at 98.025 kb on + strand, within GFF3586at 98.026 kb on - strand, within GFF3586at 98.121 kb on + strand, within GFF3586

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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95,471 + GFF3583 0.80 -4.7
95,471 + GFF3583 0.80 -4.6
95,471 + GFF3583 0.80 -1.4
95,472 - GFF3583 0.80 -0.2
95,474 + GFF3583 0.80 -2.6
95,475 - GFF3583 0.80 -3.3
95,514 - GFF3583 0.83 -0.7
95,609 + GFF3583 0.89 +0.2
95,693 + -0.7
95,693 + -1.2
95,694 - -1.9
95,694 - -0.7
95,694 - -4.1
95,694 - -2.7
95,694 - -3.1
95,694 - -1.5
95,765 + -1.8
95,765 + +2.2
95,765 + +0.8
95,765 + -2.4
95,765 + -0.9
95,765 + +3.3
95,765 + -1.4
95,765 + -2.2
95,765 + -1.0
95,765 + -0.9
95,766 - +0.5
95,766 - +1.6
95,815 - -0.7
95,815 - +0.6
96,204 + GFF3584 0.75 -3.1
96,205 - GFF3584 0.75 +2.2
96,354 - -1.3
96,514 + GFF3585 0.25 -2.4
96,514 + GFF3585 0.25 +0.5
96,514 + GFF3585 0.25 +0.4
96,515 - GFF3585 0.25 -0.1
96,515 - GFF3585 0.25 +0.5
96,515 - GFF3585 0.25 -0.4
96,515 - GFF3585 0.25 +0.3
96,700 + GFF3585 0.47 -0.8
96,700 + GFF3585 0.47 +0.6
96,701 - GFF3585 0.47 -1.4
96,703 + GFF3585 0.48 -1.9
96,703 + GFF3585 0.48 +3.1
96,703 + GFF3585 0.48 +0.9
96,703 + GFF3585 0.48 -1.0
96,703 + GFF3585 0.48 -1.0
96,703 + GFF3585 0.48 +0.8
96,703 + GFF3585 0.48 -1.8
96,703 + GFF3585 0.48 -0.4
96,704 - GFF3585 0.48 -1.0
96,704 - GFF3585 0.48 -1.4
96,704 - GFF3585 0.48 +1.0
96,704 - GFF3585 0.48 +0.7
96,704 - GFF3585 0.48 -1.8
96,704 - GFF3585 0.48 -3.4
96,704 - GFF3585 0.48 +1.4
96,704 - GFF3585 0.48 -1.5
96,704 - GFF3585 0.48 -4.0
96,704 - GFF3585 0.48 -1.0
96,709 + GFF3585 0.48 -0.4
96,710 - GFF3585 0.48 -1.8
96,710 - GFF3585 0.48 -0.6
96,736 + GFF3585 0.52 -2.6
96,736 + GFF3585 0.52 +2.5
96,736 + GFF3585 0.52 -0.4
96,737 - GFF3585 0.52 -1.2
96,737 - GFF3585 0.52 -1.9
96,737 - GFF3585 0.52 -2.5
96,737 - GFF3585 0.52 -0.7
97,158 + +1.3
97,158 + +0.3
97,159 - -1.4
97,413 + GFF3586 0.24 +0.2
97,507 - GFF3586 0.32 -1.3
97,548 + GFF3586 0.36 -0.7
97,605 + GFF3586 0.41 -1.5
97,606 - GFF3586 0.42 -4.1
97,650 + GFF3586 0.46 -0.1
97,651 - GFF3586 0.46 -1.3
97,704 + GFF3586 0.51 +0.8
97,704 + GFF3586 0.51 -2.4
97,705 - GFF3586 0.51 -0.4
97,705 - GFF3586 0.51 -1.0
97,926 + GFF3586 0.71 -0.8
97,926 + GFF3586 0.71 +0.5
97,926 + GFF3586 0.71 -1.1
97,926 + GFF3586 0.71 -0.7
97,926 + GFF3586 0.71 -1.1
97,927 - GFF3586 0.71 +0.0
97,927 - GFF3586 0.71 +0.2
97,927 - GFF3586 0.71 -0.4
97,929 + GFF3586 0.71 -2.2
97,929 + GFF3586 0.71 -1.8
97,929 + GFF3586 0.71 +0.1
97,930 - GFF3586 0.72 +0.1
97,930 - GFF3586 0.72 -1.7
98,004 + GFF3586 0.78 +0.8
98,005 - GFF3586 0.79 -0.0
98,025 + GFF3586 0.80 -1.8
98,026 - GFF3586 0.80 +0.7
98,121 + GFF3586 0.89 -1.4

Or see this region's nucleotide sequence