Strain Fitness in Variovorax sp. SCN45 around GFF3536

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3534 and GFF3535 are separated by 4 nucleotidesGFF3535 and GFF3536 are separated by 186 nucleotidesGFF3536 and GFF3537 are separated by 100 nucleotides GFF3534 - hypothetical protein, at 40,847 to 41,185 GFF3534 GFF3535 - Aquaporin Z, at 41,190 to 41,897 GFF3535 GFF3536 - Alcohol dehydrogenase (EC 1.1.1.1), at 42,084 to 43,094 GFF3536 GFF3537 - Transcriptional regulator, LysR family, at 43,195 to 44,115 GFF3537 Position (kb) 42 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 41.102 kb on + strand, within GFF3534at 41.225 kb on - strandat 41.293 kb on + strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.476 kb on - strand, within GFF3535at 41.476 kb on - strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.587 kb on + strand, within GFF3535at 41.587 kb on + strand, within GFF3535at 41.587 kb on + strand, within GFF3535at 41.588 kb on - strand, within GFF3535at 41.588 kb on - strand, within GFF3535at 41.588 kb on - strand, within GFF3535at 41.635 kb on + strand, within GFF3535at 41.636 kb on - strand, within GFF3535at 41.731 kb on + strand, within GFF3535at 41.731 kb on + strand, within GFF3535at 41.731 kb on + strand, within GFF3535at 41.852 kb on + strandat 41.959 kb on + strandat 41.959 kb on + strandat 41.959 kb on + strandat 41.960 kb on - strandat 41.960 kb on - strandat 41.960 kb on - strandat 42.160 kb on + strandat 42.161 kb on - strandat 42.161 kb on - strandat 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.958 kb on + strand, within GFF3536at 42.959 kb on - strand, within GFF3536at 42.959 kb on - strand, within GFF3536at 42.959 kb on - strand, within GFF3536at 42.959 kb on - strand, within GFF3536at 43.131 kb on + strandat 43.173 kb on + strandat 43.390 kb on + strand, within GFF3537at 43.390 kb on + strand, within GFF3537at 43.390 kb on + strand, within GFF3537at 43.391 kb on - strand, within GFF3537at 43.391 kb on - strand, within GFF3537at 43.393 kb on + strand, within GFF3537at 43.393 kb on + strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.394 kb on - strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.711 kb on + strand, within GFF3537at 43.712 kb on - strand, within GFF3537at 43.712 kb on - strand, within GFF3537at 43.777 kb on + strand, within GFF3537at 43.778 kb on - strand, within GFF3537at 43.778 kb on - strand, within GFF3537at 43.778 kb on - strand, within GFF3537at 43.796 kb on + strand, within GFF3537

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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41,102 + GFF3534 0.75 +0.1
41,225 - -1.0
41,293 + GFF3535 0.15 -0.9
41,294 - GFF3535 0.15 +0.2
41,294 - GFF3535 0.15 -0.7
41,294 - GFF3535 0.15 +0.1
41,294 - GFF3535 0.15 -2.5
41,475 + GFF3535 0.40 +2.7
41,475 + GFF3535 0.40 -0.2
41,475 + GFF3535 0.40 -0.9
41,475 + GFF3535 0.40 -1.0
41,475 + GFF3535 0.40 -0.9
41,475 + GFF3535 0.40 +1.8
41,476 - GFF3535 0.40 -0.8
41,476 - GFF3535 0.40 +1.8
41,506 + GFF3535 0.45 -2.1
41,506 + GFF3535 0.45 -1.2
41,506 + GFF3535 0.45 -0.3
41,506 + GFF3535 0.45 -0.2
41,506 + GFF3535 0.45 +0.8
41,506 + GFF3535 0.45 -0.6
41,506 + GFF3535 0.45 -0.2
41,507 - GFF3535 0.45 -2.8
41,507 - GFF3535 0.45 -1.7
41,507 - GFF3535 0.45 -0.4
41,507 - GFF3535 0.45 -2.4
41,507 - GFF3535 0.45 +0.3
41,587 + GFF3535 0.56 -1.3
41,587 + GFF3535 0.56 +3.7
41,587 + GFF3535 0.56 +0.5
41,588 - GFF3535 0.56 +0.5
41,588 - GFF3535 0.56 +0.3
41,588 - GFF3535 0.56 +0.6
41,635 + GFF3535 0.63 +0.5
41,636 - GFF3535 0.63 -2.3
41,731 + GFF3535 0.76 -0.3
41,731 + GFF3535 0.76 +0.9
41,731 + GFF3535 0.76 -3.0
41,852 + -0.8
41,959 + -2.1
41,959 + +0.2
41,959 + -0.1
41,960 - -1.2
41,960 - +2.2
41,960 - -1.8
42,160 + -0.2
42,161 - -0.6
42,161 - +0.3
42,280 + GFF3536 0.19 +1.0
42,280 + GFF3536 0.19 -1.8
42,280 + GFF3536 0.19 -0.4
42,280 + GFF3536 0.19 +1.2
42,280 + GFF3536 0.19 -2.1
42,280 + GFF3536 0.19 +0.3
42,281 - GFF3536 0.19 +2.2
42,281 - GFF3536 0.19 -0.6
42,281 - GFF3536 0.19 +2.2
42,281 - GFF3536 0.19 -0.8
42,281 - GFF3536 0.19 -0.9
42,281 - GFF3536 0.19 -0.5
42,281 - GFF3536 0.19 +0.2
42,958 + GFF3536 0.86 -3.3
42,959 - GFF3536 0.87 -2.4
42,959 - GFF3536 0.87 -0.2
42,959 - GFF3536 0.87 -1.6
42,959 - GFF3536 0.87 -0.2
43,131 + -3.3
43,173 + -2.2
43,390 + GFF3537 0.21 -1.2
43,390 + GFF3537 0.21 -0.2
43,390 + GFF3537 0.21 -1.7
43,391 - GFF3537 0.21 -1.3
43,391 - GFF3537 0.21 -0.4
43,393 + GFF3537 0.21 -1.2
43,393 + GFF3537 0.21 +0.2
43,394 - GFF3537 0.22 +0.4
43,394 - GFF3537 0.22 +0.6
43,394 - GFF3537 0.22 -2.2
43,394 - GFF3537 0.22 -0.2
43,711 + GFF3537 0.56 -3.3
43,711 + GFF3537 0.56 -0.0
43,711 + GFF3537 0.56 +0.4
43,711 + GFF3537 0.56 -1.8
43,712 - GFF3537 0.56 -2.1
43,712 - GFF3537 0.56 -0.8
43,777 + GFF3537 0.63 +0.9
43,778 - GFF3537 0.63 -0.4
43,778 - GFF3537 0.63 +1.8
43,778 - GFF3537 0.63 +0.1
43,796 + GFF3537 0.65 -0.8

Or see this region's nucleotide sequence