Strain Fitness in Variovorax sp. SCN45 around GFF3522

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3520 and GFF3521 are separated by 4 nucleotidesGFF3521 and GFF3522 are separated by 125 nucleotidesGFF3522 and GFF3523 are separated by 54 nucleotides GFF3520 - Osmosensitive K+ channel histidine kinase KdpD, at 23,992 to 26,745 GFF3520 GFF3521 - DNA-binding response regulator KdpE, at 26,750 to 27,454 GFF3521 GFF3522 - no description, at 27,580 to 28,761 GFF3522 GFF3523 - hypothetical protein, at 28,816 to 30,168 GFF3523 Position (kb) 27 28 29Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 27.047 kb on + strand, within GFF3521at 27.047 kb on + strand, within GFF3521at 27.047 kb on + strand, within GFF3521at 27.048 kb on - strand, within GFF3521at 27.329 kb on + strand, within GFF3521at 27.330 kb on - strand, within GFF3521at 27.330 kb on - strand, within GFF3521at 27.347 kb on + strand, within GFF3521at 27.347 kb on + strand, within GFF3521at 27.359 kb on + strand, within GFF3521at 27.359 kb on + strand, within GFF3521at 27.359 kb on + strand, within GFF3521at 27.359 kb on + strand, within GFF3521at 27.359 kb on + strand, within GFF3521at 27.359 kb on + strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.360 kb on - strand, within GFF3521at 27.438 kb on - strandat 27.452 kb on + strandat 27.463 kb on + strandat 27.463 kb on + strandat 27.464 kb on - strandat 27.565 kb on + strandat 27.565 kb on + strandat 27.565 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.587 kb on + strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 27.588 kb on - strandat 28.153 kb on + strand, within GFF3522at 28.153 kb on + strand, within GFF3522at 28.153 kb on - strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.288 kb on + strand, within GFF3522at 28.289 kb on - strand, within GFF3522at 28.289 kb on - strand, within GFF3522at 28.294 kb on + strand, within GFF3522at 28.294 kb on + strand, within GFF3522at 28.294 kb on + strand, within GFF3522at 28.551 kb on + strand, within GFF3522at 28.551 kb on + strand, within GFF3522at 28.640 kb on - strand, within GFF3522at 28.640 kb on - strand, within GFF3522at 28.640 kb on - strand, within GFF3522at 28.919 kb on - strandat 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.036 kb on + strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.037 kb on - strand, within GFF3523at 29.042 kb on + strand, within GFF3523at 29.043 kb on - strand, within GFF3523at 29.043 kb on - strand, within GFF3523at 29.043 kb on - strand, within GFF3523at 29.070 kb on - strand, within GFF3523at 29.075 kb on + strand, within GFF3523at 29.075 kb on + strand, within GFF3523at 29.075 kb on + strand, within GFF3523at 29.198 kb on + strand, within GFF3523at 29.198 kb on + strand, within GFF3523at 29.198 kb on + strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.199 kb on - strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.360 kb on + strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.361 kb on - strand, within GFF3523at 29.424 kb on + strand, within GFF3523at 29.522 kb on + strand, within GFF3523at 29.522 kb on + strand, within GFF3523at 29.522 kb on + strand, within GFF3523at 29.522 kb on + strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.523 kb on - strand, within GFF3523at 29.639 kb on + strand, within GFF3523at 29.639 kb on + strand, within GFF3523at 29.639 kb on + strand, within GFF3523at 29.640 kb on - strand, within GFF3523

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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27,047 + GFF3521 0.42 -0.4
27,047 + GFF3521 0.42 +1.1
27,047 + GFF3521 0.42 -0.4
27,048 - GFF3521 0.42 -0.3
27,329 + GFF3521 0.82 -2.8
27,330 - GFF3521 0.82 -1.1
27,330 - GFF3521 0.82 -1.0
27,347 + GFF3521 0.85 -2.3
27,347 + GFF3521 0.85 -0.3
27,359 + GFF3521 0.86 -2.3
27,359 + GFF3521 0.86 -1.4
27,359 + GFF3521 0.86 -2.8
27,359 + GFF3521 0.86 -1.7
27,359 + GFF3521 0.86 +1.2
27,359 + GFF3521 0.86 -3.2
27,360 - GFF3521 0.87 -0.9
27,360 - GFF3521 0.87 -2.7
27,360 - GFF3521 0.87 +1.8
27,360 - GFF3521 0.87 +0.0
27,360 - GFF3521 0.87 -0.9
27,360 - GFF3521 0.87 +1.4
27,360 - GFF3521 0.87 -0.3
27,360 - GFF3521 0.87 -0.8
27,360 - GFF3521 0.87 -2.4
27,360 - GFF3521 0.87 -2.0
27,438 - +1.2
27,452 + -2.4
27,463 + +1.3
27,463 + -1.1
27,464 - -0.7
27,565 + -2.4
27,565 + +4.2
27,565 + +3.6
27,587 + +2.3
27,587 + -0.3
27,587 + -2.3
27,587 + -0.8
27,587 + +0.4
27,587 + -1.2
27,587 + -1.0
27,587 + -1.4
27,587 + +0.1
27,587 + -2.8
27,588 - +1.5
27,588 - +0.6
27,588 - -1.5
27,588 - +1.2
27,588 - -3.7
27,588 - -0.7
27,588 - -2.4
27,588 - -0.7
27,588 - +0.2
27,588 - -1.0
28,153 + GFF3522 0.48 +0.5
28,153 + GFF3522 0.48 +1.1
28,153 - GFF3522 0.48 +0.2
28,288 + GFF3522 0.60 -1.6
28,288 + GFF3522 0.60 -0.2
28,288 + GFF3522 0.60 +0.6
28,288 + GFF3522 0.60 +0.1
28,288 + GFF3522 0.60 -1.4
28,289 - GFF3522 0.60 +0.5
28,289 - GFF3522 0.60 +1.7
28,294 + GFF3522 0.60 +1.2
28,294 + GFF3522 0.60 -2.1
28,294 + GFF3522 0.60 -1.4
28,551 + GFF3522 0.82 -1.4
28,551 + GFF3522 0.82 -2.8
28,640 - GFF3522 0.90 +3.0
28,640 - GFF3522 0.90 +1.1
28,640 - GFF3522 0.90 +1.4
28,919 - -0.1
29,036 + GFF3523 0.16 +0.2
29,036 + GFF3523 0.16 -0.2
29,036 + GFF3523 0.16 +0.7
29,036 + GFF3523 0.16 +0.2
29,036 + GFF3523 0.16 -0.7
29,036 + GFF3523 0.16 +0.2
29,036 + GFF3523 0.16 -0.1
29,036 + GFF3523 0.16 +1.4
29,036 + GFF3523 0.16 +0.5
29,036 + GFF3523 0.16 -2.0
29,036 + GFF3523 0.16 +0.6
29,036 + GFF3523 0.16 +0.6
29,036 + GFF3523 0.16 -0.7
29,036 + GFF3523 0.16 +0.2
29,036 + GFF3523 0.16 +0.6
29,037 - GFF3523 0.16 +0.0
29,037 - GFF3523 0.16 +0.7
29,037 - GFF3523 0.16 +1.2
29,037 - GFF3523 0.16 -0.2
29,037 - GFF3523 0.16 +0.3
29,037 - GFF3523 0.16 +1.6
29,037 - GFF3523 0.16 +1.2
29,042 + GFF3523 0.17 -2.1
29,043 - GFF3523 0.17 -0.3
29,043 - GFF3523 0.17 -0.4
29,043 - GFF3523 0.17 -2.7
29,070 - GFF3523 0.19 +2.0
29,075 + GFF3523 0.19 -0.0
29,075 + GFF3523 0.19 -0.4
29,075 + GFF3523 0.19 -2.1
29,198 + GFF3523 0.28 -1.4
29,198 + GFF3523 0.28 -0.1
29,198 + GFF3523 0.28 -0.7
29,199 - GFF3523 0.28 -1.6
29,199 - GFF3523 0.28 -2.4
29,199 - GFF3523 0.28 +0.7
29,199 - GFF3523 0.28 +0.4
29,199 - GFF3523 0.28 -0.4
29,199 - GFF3523 0.28 -1.0
29,199 - GFF3523 0.28 -2.1
29,360 + GFF3523 0.40 +0.8
29,360 + GFF3523 0.40 -1.0
29,360 + GFF3523 0.40 -2.3
29,360 + GFF3523 0.40 -0.0
29,360 + GFF3523 0.40 -2.9
29,360 + GFF3523 0.40 +0.7
29,360 + GFF3523 0.40 -1.2
29,360 + GFF3523 0.40 +1.1
29,360 + GFF3523 0.40 -1.2
29,360 + GFF3523 0.40 -3.1
29,361 - GFF3523 0.40 -0.4
29,361 - GFF3523 0.40 +0.4
29,361 - GFF3523 0.40 -0.5
29,361 - GFF3523 0.40 -1.0
29,361 - GFF3523 0.40 -0.3
29,361 - GFF3523 0.40 -2.5
29,424 + GFF3523 0.45 -1.0
29,522 + GFF3523 0.52 +0.5
29,522 + GFF3523 0.52 -3.8
29,522 + GFF3523 0.52 -0.7
29,522 + GFF3523 0.52 +0.2
29,523 - GFF3523 0.52 -0.8
29,523 - GFF3523 0.52 -2.2
29,523 - GFF3523 0.52 -3.8
29,523 - GFF3523 0.52 -1.4
29,523 - GFF3523 0.52 -3.2
29,639 + GFF3523 0.61 +2.6
29,639 + GFF3523 0.61 -1.0
29,639 + GFF3523 0.61 -2.1
29,640 - GFF3523 0.61 -0.6

Or see this region's nucleotide sequence