Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3454 and GFF3455 are separated by 15 nucleotides GFF3455 and GFF3456 are separated by 2 nucleotides
GFF3454 - Cys regulon transcriptional activator CysB, at 275,982 to 276,872
GFF3454
GFF3455 - Two component response regulator associated with urea and amide use, at 276,888 to 277,538
GFF3455
GFF3456 - Possible regulatory protein similar to urea ABC transporter, substrate binding protein, at 277,541 to 278,695
GFF3456
Position (kb) 276
277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 275.904 kb on - strand at 275.949 kb on + strand at 276.378 kb on + strand, within GFF3454 at 276.378 kb on + strand, within GFF3454 at 276.379 kb on - strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.588 kb on + strand, within GFF3454 at 276.589 kb on - strand, within GFF3454 at 276.589 kb on - strand, within GFF3454 at 276.713 kb on - strand, within GFF3454 at 276.957 kb on + strand, within GFF3455 at 276.957 kb on + strand, within GFF3455 at 276.958 kb on - strand, within GFF3455 at 276.958 kb on - strand, within GFF3455 at 276.958 kb on - strand, within GFF3455 at 277.476 kb on + strand at 277.476 kb on + strand at 277.476 kb on + strand at 277.600 kb on - strand at 277.600 kb on - strand at 277.827 kb on + strand, within GFF3456 at 277.828 kb on - strand, within GFF3456 at 278.046 kb on + strand, within GFF3456 at 278.047 kb on - strand, within GFF3456 at 278.169 kb on + strand, within GFF3456 at 278.250 kb on + strand, within GFF3456 at 278.251 kb on - strand, within GFF3456 at 278.251 kb on - strand, within GFF3456 at 278.269 kb on - strand, within GFF3456 at 278.344 kb on - strand, within GFF3456 at 278.362 kb on - strand, within GFF3456 at 278.376 kb on + strand, within GFF3456 at 278.377 kb on - strand, within GFF3456 at 278.377 kb on - strand, within GFF3456 at 278.451 kb on + strand, within GFF3456 at 278.452 kb on - strand, within GFF3456 at 278.452 kb on - strand, within GFF3456
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 275,904 - +0.6 275,949 + +1.0 276,378 + GFF3454 0.44 +1.0 276,378 + GFF3454 0.44 +1.3 276,379 - GFF3454 0.45 -2.5 276,588 + GFF3454 0.68 -0.0 276,588 + GFF3454 0.68 -2.0 276,588 + GFF3454 0.68 -1.6 276,588 + GFF3454 0.68 -0.7 276,588 + GFF3454 0.68 -2.3 276,589 - GFF3454 0.68 -1.5 276,589 - GFF3454 0.68 +0.8 276,713 - GFF3454 0.82 -1.9 276,957 + GFF3455 0.11 +0.5 276,957 + GFF3455 0.11 -1.9 276,958 - GFF3455 0.11 -1.0 276,958 - GFF3455 0.11 +0.3 276,958 - GFF3455 0.11 -3.3 277,476 + +0.0 277,476 + -2.0 277,476 + +1.1 277,600 - +1.9 277,600 - +1.3 277,827 + GFF3456 0.25 +3.1 277,828 - GFF3456 0.25 +3.2 278,046 + GFF3456 0.44 +0.2 278,047 - GFF3456 0.44 -1.3 278,169 + GFF3456 0.54 -3.6 278,250 + GFF3456 0.61 -1.0 278,251 - GFF3456 0.61 -0.7 278,251 - GFF3456 0.61 -2.3 278,269 - GFF3456 0.63 -1.0 278,344 - GFF3456 0.70 +1.1 278,362 - GFF3456 0.71 +2.5 278,376 + GFF3456 0.72 +1.0 278,377 - GFF3456 0.72 +1.3 278,377 - GFF3456 0.72 +1.7 278,451 + GFF3456 0.79 +1.0 278,452 - GFF3456 0.79 +1.4 278,452 - GFF3456 0.79 +1.3
Or see this region's nucleotide sequence