Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3446 and GFF3447 are separated by 48 nucleotides GFF3447 and GFF3448 overlap by 4 nucleotides GFF3448 and GFF3449 are separated by 19 nucleotides
GFF3446 - Quinone oxidoreductase (EC 1.6.5.5), at 268,786 to 269,793
GFF3446
GFF3447 - FIG00555764: hypothetical protein, at 269,842 to 270,732
GFF3447
GFF3448 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 270,729 to 271,493
GFF3448
GFF3449 - Intradiol ring-cleavage dioxygenase:Catechol dioxygenase, N-terminal, at 271,513 to 272,379
GFF3449
Position (kb) 269
270
271 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 269.091 kb on - strand, within GFF3446 at 269.091 kb on - strand, within GFF3446 at 269.111 kb on + strand, within GFF3446 at 269.139 kb on + strand, within GFF3446 at 269.510 kb on + strand, within GFF3446 at 269.511 kb on - strand, within GFF3446 at 269.981 kb on + strand, within GFF3447 at 269.981 kb on + strand, within GFF3447 at 270.111 kb on - strand, within GFF3447 at 270.143 kb on + strand, within GFF3447 at 270.143 kb on + strand, within GFF3447 at 270.144 kb on - strand, within GFF3447 at 270.144 kb on - strand, within GFF3447 at 270.144 kb on - strand, within GFF3447 at 270.537 kb on - strand, within GFF3447 at 271.003 kb on + strand, within GFF3448 at 271.003 kb on + strand, within GFF3448 at 271.003 kb on + strand, within GFF3448 at 271.003 kb on + strand, within GFF3448 at 271.004 kb on - strand, within GFF3448 at 271.004 kb on - strand, within GFF3448 at 271.004 kb on - strand, within GFF3448 at 271.420 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.493 kb on + strand at 271.494 kb on - strand at 271.494 kb on - strand at 271.494 kb on - strand at 271.494 kb on - strand at 271.494 kb on - strand at 271.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 269,091 - GFF3446 0.30 -1.3 269,091 - GFF3446 0.30 -4.1 269,111 + GFF3446 0.32 -0.8 269,139 + GFF3446 0.35 -2.3 269,510 + GFF3446 0.72 -2.7 269,511 - GFF3446 0.72 +1.5 269,981 + GFF3447 0.16 -2.5 269,981 + GFF3447 0.16 +0.1 270,111 - GFF3447 0.30 -2.3 270,143 + GFF3447 0.34 +1.7 270,143 + GFF3447 0.34 +0.1 270,144 - GFF3447 0.34 +2.3 270,144 - GFF3447 0.34 +1.9 270,144 - GFF3447 0.34 -1.6 270,537 - GFF3447 0.78 +2.2 271,003 + GFF3448 0.36 -0.5 271,003 + GFF3448 0.36 -0.7 271,003 + GFF3448 0.36 -1.3 271,003 + GFF3448 0.36 -0.2 271,004 - GFF3448 0.36 -0.2 271,004 - GFF3448 0.36 +1.2 271,004 - GFF3448 0.36 +0.9 271,420 + -1.4 271,493 + -2.6 271,493 + -3.2 271,493 + -3.0 271,493 + +0.6 271,493 + +1.0 271,493 + -1.0 271,494 - +0.3 271,494 - -0.4 271,494 - -0.0 271,494 - +1.5 271,494 - -1.5 271,500 - -2.3
Or see this region's nucleotide sequence