Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3377 and GFF3378 are separated by 79 nucleotides GFF3378 and GFF3379 are separated by 6 nucleotides GFF3379 and GFF3380 are separated by 126 nucleotides
GFF3377 - Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17), at 197,402 to 198,184
GFF3377
GFF3378 - hypothetical protein, at 198,264 to 199,076
GFF3378
GFF3379 - Aromatic--CoA ligase, at 199,083 to 200,894
GFF3379
GFF3380 - 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 201,021 to 201,968
GFF3380
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 198.172 kb on - strand at 198.172 kb on - strand at 198.172 kb on - strand at 198.238 kb on - strand at 198.256 kb on - strand at 198.274 kb on + strand at 198.274 kb on + strand at 198.274 kb on + strand at 198.274 kb on + strand at 198.275 kb on - strand at 198.275 kb on - strand at 198.275 kb on - strand at 198.275 kb on - strand at 198.278 kb on + strand at 198.278 kb on + strand at 198.278 kb on + strand at 198.279 kb on - strand at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.468 kb on + strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 198.469 kb on - strand, within GFF3378 at 199.183 kb on + strand at 199.183 kb on + strand at 199.183 kb on + strand at 199.184 kb on - strand at 199.184 kb on - strand at 199.184 kb on - strand at 199.184 kb on - strand at 199.184 kb on - strand at 199.567 kb on + strand, within GFF3379 at 199.570 kb on + strand, within GFF3379 at 199.571 kb on - strand, within GFF3379 at 199.874 kb on - strand, within GFF3379 at 199.933 kb on + strand, within GFF3379 at 200.050 kb on + strand, within GFF3379 at 200.050 kb on + strand, within GFF3379 at 200.051 kb on - strand, within GFF3379 at 200.255 kb on - strand, within GFF3379 at 200.420 kb on - strand, within GFF3379 at 200.440 kb on + strand, within GFF3379 at 200.440 kb on + strand, within GFF3379 at 200.440 kb on + strand, within GFF3379 at 200.441 kb on - strand, within GFF3379 at 200.677 kb on + strand, within GFF3379 at 200.677 kb on + strand, within GFF3379 at 200.785 kb on + strand at 200.785 kb on + strand at 200.785 kb on + strand at 200.786 kb on - strand at 200.844 kb on + strand at 200.942 kb on - strand at 201.023 kb on - strand at 201.023 kb on - strand at 201.023 kb on - strand at 201.023 kb on - strand at 201.063 kb on + strand at 201.454 kb on + strand, within GFF3380 at 201.454 kb on + strand, within GFF3380 at 201.686 kb on + strand, within GFF3380
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 198,172 - +2.3 198,172 - +0.1 198,172 - -0.1 198,238 - -2.1 198,256 - +0.5 198,274 + -0.0 198,274 + +1.9 198,274 + +0.8 198,274 + -2.1 198,275 - -2.1 198,275 - +1.0 198,275 - +0.5 198,275 - +4.0 198,278 + +0.5 198,278 + +0.9 198,278 + -0.5 198,279 - -1.7 198,468 + GFF3378 0.25 +0.4 198,468 + GFF3378 0.25 -2.9 198,468 + GFF3378 0.25 +0.2 198,468 + GFF3378 0.25 -1.2 198,468 + GFF3378 0.25 -0.0 198,468 + GFF3378 0.25 +0.6 198,468 + GFF3378 0.25 +0.3 198,468 + GFF3378 0.25 +1.1 198,469 - GFF3378 0.25 -0.3 198,469 - GFF3378 0.25 -1.0 198,469 - GFF3378 0.25 +1.3 198,469 - GFF3378 0.25 -0.5 198,469 - GFF3378 0.25 +0.2 198,469 - GFF3378 0.25 +0.1 198,469 - GFF3378 0.25 -1.4 198,469 - GFF3378 0.25 -1.9 198,469 - GFF3378 0.25 -1.6 199,183 + -1.1 199,183 + -1.6 199,183 + -1.2 199,184 - +1.0 199,184 - -2.5 199,184 - -2.1 199,184 - -1.2 199,184 - -1.1 199,567 + GFF3379 0.27 -2.4 199,570 + GFF3379 0.27 +1.3 199,571 - GFF3379 0.27 +0.7 199,874 - GFF3379 0.44 +0.8 199,933 + GFF3379 0.47 +0.3 200,050 + GFF3379 0.53 -0.1 200,050 + GFF3379 0.53 +1.3 200,051 - GFF3379 0.53 -1.7 200,255 - GFF3379 0.65 -0.9 200,420 - GFF3379 0.74 +0.4 200,440 + GFF3379 0.75 -2.0 200,440 + GFF3379 0.75 -0.0 200,440 + GFF3379 0.75 -2.3 200,441 - GFF3379 0.75 -0.9 200,677 + GFF3379 0.88 -3.0 200,677 + GFF3379 0.88 +1.7 200,785 + +0.6 200,785 + -1.7 200,785 + +0.4 200,786 - +0.6 200,844 + -2.8 200,942 - -0.8 201,023 - -0.5 201,023 - -2.2 201,023 - +3.2 201,023 - +1.0 201,063 + +1.0 201,454 + GFF3380 0.46 -1.6 201,454 + GFF3380 0.46 +0.3 201,686 + GFF3380 0.70 +0.4
Or see this region's nucleotide sequence