Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3347 and GFF3348 are separated by 4 nucleotides GFF3348 and GFF3349 are separated by 160 nucleotides GFF3349 and GFF3350 are separated by 3 nucleotides
GFF3347 - Adenylate cyclase (EC 4.6.1.1), at 170,036 to 170,557
GFF3347
GFF3348 - Putative lipase, at 170,562 to 171,203
GFF3348
GFF3349 - Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1), at 171,364 to 172,545
GFF3349
GFF3350 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 172,549 to 174,378
GFF3350
Position (kb) 171
172
173 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 170.528 kb on + strand at 170.529 kb on - strand at 170.618 kb on - strand at 170.680 kb on + strand, within GFF3348 at 170.680 kb on + strand, within GFF3348 at 170.681 kb on - strand, within GFF3348 at 170.681 kb on - strand, within GFF3348 at 170.728 kb on + strand, within GFF3348 at 170.729 kb on - strand, within GFF3348 at 170.729 kb on - strand, within GFF3348 at 170.729 kb on - strand, within GFF3348 at 170.729 kb on - strand, within GFF3348 at 170.729 kb on - strand, within GFF3348 at 170.917 kb on + strand, within GFF3348 at 170.918 kb on - strand, within GFF3348 at 171.217 kb on + strand at 171.218 kb on - strand at 171.269 kb on + strand at 171.269 kb on + strand at 171.410 kb on + strand at 171.518 kb on - strand, within GFF3349 at 171.518 kb on - strand, within GFF3349 at 171.601 kb on + strand, within GFF3349 at 171.601 kb on + strand, within GFF3349 at 171.733 kb on + strand, within GFF3349 at 171.766 kb on - strand, within GFF3349 at 171.802 kb on + strand, within GFF3349 at 171.802 kb on + strand, within GFF3349 at 171.802 kb on + strand, within GFF3349 at 171.803 kb on - strand, within GFF3349 at 171.803 kb on - strand, within GFF3349 at 171.899 kb on - strand, within GFF3349 at 171.988 kb on + strand, within GFF3349 at 172.069 kb on + strand, within GFF3349 at 172.070 kb on - strand, within GFF3349 at 172.070 kb on - strand, within GFF3349 at 172.150 kb on + strand, within GFF3349 at 172.151 kb on - strand, within GFF3349 at 172.151 kb on - strand, within GFF3349 at 172.274 kb on - strand, within GFF3349 at 172.274 kb on - strand, within GFF3349 at 172.274 kb on - strand, within GFF3349 at 172.303 kb on + strand, within GFF3349 at 172.325 kb on - strand, within GFF3349 at 172.391 kb on - strand, within GFF3349 at 172.573 kb on + strand at 172.574 kb on - strand at 172.606 kb on + strand at 172.607 kb on - strand at 172.682 kb on - strand at 172.682 kb on - strand at 172.696 kb on + strand at 172.697 kb on - strand at 172.697 kb on - strand at 172.720 kb on + strand at 172.721 kb on - strand at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.185 kb on + strand, within GFF3350 at 173.185 kb on + strand, within GFF3350 at 173.186 kb on - strand, within GFF3350 at 173.186 kb on - strand, within GFF3350 at 173.315 kb on - strand, within GFF3350 at 173.315 kb on - strand, within GFF3350 at 173.378 kb on + strand, within GFF3350 at 173.378 kb on + strand, within GFF3350 at 173.545 kb on + strand, within GFF3350
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 170,528 + -0.1 170,529 - -3.3 170,618 - +0.4 170,680 + GFF3348 0.18 +0.2 170,680 + GFF3348 0.18 -1.2 170,681 - GFF3348 0.19 +3.5 170,681 - GFF3348 0.19 +1.3 170,728 + GFF3348 0.26 +0.9 170,729 - GFF3348 0.26 -0.9 170,729 - GFF3348 0.26 -3.4 170,729 - GFF3348 0.26 -1.3 170,729 - GFF3348 0.26 -0.4 170,729 - GFF3348 0.26 +0.8 170,917 + GFF3348 0.55 -0.9 170,918 - GFF3348 0.55 +1.8 171,217 + -0.5 171,218 - +0.6 171,269 + +0.9 171,269 + -1.4 171,410 + -0.3 171,518 - GFF3349 0.13 +0.7 171,518 - GFF3349 0.13 -0.6 171,601 + GFF3349 0.20 -0.8 171,601 + GFF3349 0.20 +0.6 171,733 + GFF3349 0.31 -0.5 171,766 - GFF3349 0.34 -1.0 171,802 + GFF3349 0.37 +1.9 171,802 + GFF3349 0.37 +1.0 171,802 + GFF3349 0.37 +0.9 171,803 - GFF3349 0.37 -0.7 171,803 - GFF3349 0.37 -1.1 171,899 - GFF3349 0.45 +0.3 171,988 + GFF3349 0.53 -1.2 172,069 + GFF3349 0.60 -1.8 172,070 - GFF3349 0.60 +0.9 172,070 - GFF3349 0.60 -1.2 172,150 + GFF3349 0.66 +3.7 172,151 - GFF3349 0.67 -1.4 172,151 - GFF3349 0.67 +1.7 172,274 - GFF3349 0.77 -0.7 172,274 - GFF3349 0.77 -0.9 172,274 - GFF3349 0.77 +1.1 172,303 + GFF3349 0.79 -0.7 172,325 - GFF3349 0.81 -0.1 172,391 - GFF3349 0.87 -2.7 172,573 + +0.2 172,574 - +2.1 172,606 + -0.6 172,607 - -0.6 172,682 - -0.3 172,682 - -1.9 172,696 + -3.9 172,697 - -0.5 172,697 - +1.6 172,720 + -1.0 172,721 - -1.5 173,182 + GFF3350 0.35 -0.7 173,182 + GFF3350 0.35 -0.5 173,182 + GFF3350 0.35 +0.7 173,182 + GFF3350 0.35 -2.5 173,182 + GFF3350 0.35 +0.3 173,182 + GFF3350 0.35 -0.1 173,182 + GFF3350 0.35 -0.3 173,182 + GFF3350 0.35 -0.7 173,182 + GFF3350 0.35 -0.9 173,182 + GFF3350 0.35 -1.0 173,182 + GFF3350 0.35 -0.4 173,182 + GFF3350 0.35 -0.4 173,182 + GFF3350 0.35 +0.7 173,182 + GFF3350 0.35 -0.9 173,183 - GFF3350 0.35 +0.6 173,183 - GFF3350 0.35 -1.3 173,183 - GFF3350 0.35 -0.0 173,183 - GFF3350 0.35 +0.1 173,183 - GFF3350 0.35 -0.5 173,183 - GFF3350 0.35 +0.3 173,183 - GFF3350 0.35 -2.1 173,183 - GFF3350 0.35 -1.7 173,183 - GFF3350 0.35 -2.5 173,183 - GFF3350 0.35 -0.0 173,185 + GFF3350 0.35 -0.1 173,185 + GFF3350 0.35 +0.3 173,186 - GFF3350 0.35 -0.0 173,186 - GFF3350 0.35 +0.8 173,315 - GFF3350 0.42 -1.6 173,315 - GFF3350 0.42 -2.7 173,378 + GFF3350 0.45 -2.6 173,378 + GFF3350 0.45 -0.3 173,545 + GFF3350 0.54 -1.6
Or see this region's nucleotide sequence