Strain Fitness in Variovorax sp. SCN45 around GFF3331

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3329 and GFF3330 overlap by 4 nucleotidesGFF3330 and GFF3331 are separated by 158 nucleotidesGFF3331 and GFF3332 are separated by 184 nucleotidesGFF3332 and GFF3333 are separated by 3 nucleotidesGFF3333 and GFF3334 are separated by 10 nucleotides GFF3329 - Terpene utilization protein AtuA, at 155,050 to 156,858 GFF3329 GFF3330 - Isohexenylglutaconyl-CoA hydratase (EC 4.2.1.57), at 156,855 to 157,637 GFF3330 GFF3331 - Glutathione S-transferase (EC 2.5.1.18), at 157,796 to 158,404 GFF3331 GFF3332 - UPF0391 membrane protein RPC_2356, at 158,589 to 158,774 GFF3332 GFF3333 - hypothetical protein, at 158,778 to 158,924 GFF3333 GFF3334 - hypothetical protein, at 158,935 to 159,822 GFF3334 Position (kb) 157 158 159Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 157.003 kb on + strand, within GFF3330at 157.003 kb on + strand, within GFF3330at 157.003 kb on + strand, within GFF3330at 157.003 kb on + strand, within GFF3330at 157.003 kb on + strand, within GFF3330at 157.003 kb on + strand, within GFF3330at 157.004 kb on - strand, within GFF3330at 157.004 kb on - strand, within GFF3330at 157.004 kb on - strand, within GFF3330at 157.004 kb on - strand, within GFF3330at 157.382 kb on - strand, within GFF3330at 157.393 kb on + strand, within GFF3330at 157.393 kb on + strand, within GFF3330at 157.797 kb on + strandat 157.798 kb on - strandat 157.798 kb on - strandat 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.254 kb on - strand, within GFF3331at 158.254 kb on - strand, within GFF3331at 158.254 kb on - strand, within GFF3331at 158.254 kb on - strand, within GFF3331at 158.274 kb on + strand, within GFF3331at 158.274 kb on + strand, within GFF3331at 158.274 kb on + strand, within GFF3331at 158.275 kb on - strand, within GFF3331at 158.275 kb on - strand, within GFF3331at 158.275 kb on - strand, within GFF3331at 158.278 kb on - strand, within GFF3331at 158.391 kb on + strandat 158.391 kb on + strandat 158.392 kb on - strandat 158.392 kb on - strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.412 kb on - strandat 158.412 kb on - strandat 158.412 kb on - strandat 158.464 kb on + strandat 158.464 kb on + strandat 158.496 kb on - strandat 158.496 kb on - strandat 158.543 kb on + strandat 158.543 kb on + strandat 158.543 kb on + strandat 158.543 kb on + strandat 158.544 kb on - strandat 158.544 kb on - strandat 158.544 kb on - strandat 158.544 kb on - strandat 158.598 kb on + strandat 158.598 kb on + strandat 158.599 kb on - strandat 158.968 kb on + strandat 158.968 kb on + strandat 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.260 kb on - strand, within GFF3334at 159.370 kb on + strand, within GFF3334at 159.371 kb on - strand, within GFF3334at 159.371 kb on - strand, within GFF3334at 159.371 kb on - strand, within GFF3334

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
157,003 + GFF3330 0.19 +0.8
157,003 + GFF3330 0.19 -2.2
157,003 + GFF3330 0.19 +0.0
157,003 + GFF3330 0.19 -2.9
157,003 + GFF3330 0.19 +0.4
157,003 + GFF3330 0.19 +1.3
157,004 - GFF3330 0.19 -1.0
157,004 - GFF3330 0.19 -3.3
157,004 - GFF3330 0.19 +0.7
157,004 - GFF3330 0.19 -2.2
157,382 - GFF3330 0.67 -0.4
157,393 + GFF3330 0.69 -3.6
157,393 + GFF3330 0.69 +0.7
157,797 + -0.4
157,798 - -2.6
157,798 - +0.3
157,971 + GFF3331 0.29 -2.9
157,971 + GFF3331 0.29 -0.1
157,971 + GFF3331 0.29 -0.3
157,971 + GFF3331 0.29 -0.9
157,971 + GFF3331 0.29 -0.5
157,971 + GFF3331 0.29 -2.9
157,971 + GFF3331 0.29 +0.8
157,971 + GFF3331 0.29 -0.7
157,972 - GFF3331 0.29 -1.2
157,972 - GFF3331 0.29 +1.3
157,972 - GFF3331 0.29 -0.4
157,972 - GFF3331 0.29 -2.5
157,972 - GFF3331 0.29 +0.7
157,972 - GFF3331 0.29 -0.7
158,190 + GFF3331 0.65 -0.4
158,190 + GFF3331 0.65 +0.5
158,190 + GFF3331 0.65 -1.8
158,190 + GFF3331 0.65 -0.3
158,190 + GFF3331 0.65 -2.2
158,190 + GFF3331 0.65 +1.6
158,190 + GFF3331 0.65 -1.9
158,191 - GFF3331 0.65 -1.6
158,191 - GFF3331 0.65 +0.7
158,191 - GFF3331 0.65 -2.5
158,191 - GFF3331 0.65 -0.6
158,191 - GFF3331 0.65 -1.9
158,191 - GFF3331 0.65 -1.6
158,191 - GFF3331 0.65 +0.4
158,254 - GFF3331 0.75 -2.7
158,254 - GFF3331 0.75 -0.6
158,254 - GFF3331 0.75 -1.3
158,254 - GFF3331 0.75 +2.0
158,274 + GFF3331 0.78 +0.1
158,274 + GFF3331 0.78 -0.2
158,274 + GFF3331 0.78 -2.3
158,275 - GFF3331 0.79 +0.8
158,275 - GFF3331 0.79 -1.9
158,275 - GFF3331 0.79 -0.7
158,278 - GFF3331 0.79 +1.3
158,391 + -1.4
158,391 + -0.5
158,392 - -2.1
158,392 - -2.3
158,394 + +0.5
158,394 + -0.5
158,394 + -2.3
158,394 + -0.5
158,394 + -1.3
158,394 + +0.9
158,394 + -1.3
158,394 + -2.1
158,394 + -0.5
158,394 + -1.2
158,394 + -3.9
158,395 - -1.1
158,395 - -2.5
158,395 - +2.0
158,395 - -0.3
158,395 - -0.3
158,395 - +0.3
158,395 - -2.7
158,395 - +0.7
158,395 - -0.7
158,395 - -2.1
158,395 - +0.7
158,395 - -0.5
158,412 - -0.7
158,412 - -0.7
158,412 - -1.3
158,464 + -2.3
158,464 + -2.2
158,496 - +0.8
158,496 - -2.8
158,543 + -0.9
158,543 + -0.8
158,543 + -0.1
158,543 + -0.1
158,544 - -1.4
158,544 - -0.3
158,544 - -1.2
158,544 - -1.3
158,598 + -0.7
158,598 + +2.6
158,599 - +0.3
158,968 + +2.9
158,968 + -2.2
159,151 + GFF3334 0.24 -0.3
159,151 + GFF3334 0.24 -0.4
159,151 + GFF3334 0.24 +0.8
159,151 + GFF3334 0.24 -0.1
159,151 + GFF3334 0.24 -2.7
159,151 + GFF3334 0.24 +0.1
159,151 + GFF3334 0.24 -2.4
159,152 - GFF3334 0.24 +0.8
159,152 - GFF3334 0.24 -1.4
159,152 - GFF3334 0.24 -0.0
159,152 - GFF3334 0.24 +0.8
159,152 - GFF3334 0.24 +0.1
159,152 - GFF3334 0.24 +0.6
159,152 - GFF3334 0.24 -0.7
159,241 + GFF3334 0.34 -2.6
159,241 + GFF3334 0.34 -0.6
159,241 + GFF3334 0.34 -1.4
159,241 + GFF3334 0.34 -0.0
159,241 + GFF3334 0.34 +1.9
159,241 + GFF3334 0.34 +1.2
159,241 + GFF3334 0.34 -1.7
159,241 + GFF3334 0.34 -0.1
159,241 + GFF3334 0.34 -2.8
159,242 - GFF3334 0.35 +1.0
159,242 - GFF3334 0.35 -1.2
159,242 - GFF3334 0.35 +0.7
159,242 - GFF3334 0.35 +0.5
159,242 - GFF3334 0.35 -1.2
159,242 - GFF3334 0.35 -0.2
159,242 - GFF3334 0.35 -1.9
159,242 - GFF3334 0.35 +0.3
159,242 - GFF3334 0.35 -0.5
159,242 - GFF3334 0.35 +1.0
159,242 - GFF3334 0.35 +0.6
159,242 - GFF3334 0.35 -2.2
159,242 - GFF3334 0.35 +1.1
159,242 - GFF3334 0.35 -1.2
159,242 - GFF3334 0.35 -1.3
159,242 - GFF3334 0.35 +1.1
159,242 - GFF3334 0.35 +0.8
159,260 - GFF3334 0.37 +0.8
159,370 + GFF3334 0.49 -1.3
159,371 - GFF3334 0.49 -0.7
159,371 - GFF3334 0.49 +1.9
159,371 - GFF3334 0.49 -1.1

Or see this region's nucleotide sequence