Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3325 and GFF3326 are separated by 8 nucleotides GFF3326 and GFF3327 overlap by 4 nucleotides GFF3327 and GFF3328 are separated by 155 nucleotides
GFF3325 - Uncharacterized protein YaeR with similarity to glyoxylase family, at 151,998 to 152,753
GFF3325
GFF3326 - hypothetical protein, at 152,762 to 153,223
GFF3326
GFF3327 - RidA/YER057c/UK114 superfamily, group 1, at 153,220 to 153,705
GFF3327
GFF3328 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 153,861 to 154,964
GFF3328
Position (kb) 153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 152.232 kb on + strand, within GFF3325 at 152.233 kb on - strand, within GFF3325 at 152.377 kb on + strand, within GFF3325 at 152.378 kb on - strand, within GFF3325 at 152.378 kb on - strand, within GFF3325 at 152.378 kb on - strand, within GFF3325 at 152.434 kb on + strand, within GFF3325 at 152.434 kb on + strand, within GFF3325 at 152.434 kb on + strand, within GFF3325 at 152.435 kb on - strand, within GFF3325 at 152.686 kb on + strand at 152.687 kb on - strand at 152.687 kb on - strand at 152.708 kb on - strand at 152.820 kb on + strand, within GFF3326 at 152.820 kb on + strand, within GFF3326 at 152.820 kb on + strand, within GFF3326 at 152.821 kb on - strand, within GFF3326 at 152.821 kb on - strand, within GFF3326 at 152.886 kb on + strand, within GFF3326 at 152.887 kb on - strand, within GFF3326 at 152.887 kb on - strand, within GFF3326 at 152.887 kb on - strand, within GFF3326 at 153.135 kb on + strand, within GFF3326 at 153.136 kb on - strand, within GFF3326 at 153.153 kb on - strand, within GFF3326 at 153.497 kb on + strand, within GFF3327 at 153.497 kb on + strand, within GFF3327 at 153.498 kb on - strand, within GFF3327 at 153.498 kb on - strand, within GFF3327 at 153.773 kb on - strand at 153.886 kb on + strand at 153.907 kb on + strand at 153.907 kb on + strand at 153.908 kb on - strand at 153.908 kb on - strand at 154.134 kb on + strand, within GFF3328 at 154.177 kb on + strand, within GFF3328 at 154.177 kb on + strand, within GFF3328 at 154.177 kb on + strand, within GFF3328 at 154.178 kb on - strand, within GFF3328 at 154.178 kb on - strand, within GFF3328 at 154.178 kb on - strand, within GFF3328 at 154.178 kb on - strand, within GFF3328 at 154.213 kb on + strand, within GFF3328 at 154.213 kb on + strand, within GFF3328 at 154.213 kb on + strand, within GFF3328 at 154.213 kb on + strand, within GFF3328 at 154.213 kb on + strand, within GFF3328 at 154.213 kb on + strand, within GFF3328 at 154.214 kb on - strand, within GFF3328 at 154.214 kb on - strand, within GFF3328 at 154.214 kb on - strand, within GFF3328 at 154.366 kb on + strand, within GFF3328 at 154.417 kb on + strand, within GFF3328 at 154.417 kb on + strand, within GFF3328 at 154.417 kb on + strand, within GFF3328 at 154.418 kb on - strand, within GFF3328 at 154.418 kb on - strand, within GFF3328 at 154.490 kb on - strand, within GFF3328 at 154.490 kb on - strand, within GFF3328
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 152,232 + GFF3325 0.31 -1.9 152,233 - GFF3325 0.31 +1.2 152,377 + GFF3325 0.50 +0.6 152,378 - GFF3325 0.50 -0.9 152,378 - GFF3325 0.50 -1.7 152,378 - GFF3325 0.50 -1.3 152,434 + GFF3325 0.58 +0.7 152,434 + GFF3325 0.58 -0.0 152,434 + GFF3325 0.58 +0.6 152,435 - GFF3325 0.58 -0.7 152,686 + -0.0 152,687 - +2.1 152,687 - +0.9 152,708 - +2.7 152,820 + GFF3326 0.13 +0.5 152,820 + GFF3326 0.13 -1.6 152,820 + GFF3326 0.13 -1.3 152,821 - GFF3326 0.13 -3.7 152,821 - GFF3326 0.13 -1.2 152,886 + GFF3326 0.27 +0.3 152,887 - GFF3326 0.27 -3.5 152,887 - GFF3326 0.27 -0.1 152,887 - GFF3326 0.27 +0.0 153,135 + GFF3326 0.81 +0.1 153,136 - GFF3326 0.81 -0.2 153,153 - GFF3326 0.85 +0.8 153,497 + GFF3327 0.57 -0.3 153,497 + GFF3327 0.57 +1.0 153,498 - GFF3327 0.57 -0.7 153,498 - GFF3327 0.57 +1.3 153,773 - +2.3 153,886 + +0.1 153,907 + -3.4 153,907 + -0.3 153,908 - -0.3 153,908 - -0.3 154,134 + GFF3328 0.25 -0.0 154,177 + GFF3328 0.29 -0.8 154,177 + GFF3328 0.29 +1.3 154,177 + GFF3328 0.29 -0.3 154,178 - GFF3328 0.29 +0.5 154,178 - GFF3328 0.29 -1.1 154,178 - GFF3328 0.29 -1.0 154,178 - GFF3328 0.29 -1.0 154,213 + GFF3328 0.32 -1.2 154,213 + GFF3328 0.32 -0.4 154,213 + GFF3328 0.32 -1.7 154,213 + GFF3328 0.32 -0.9 154,213 + GFF3328 0.32 -1.3 154,213 + GFF3328 0.32 +1.2 154,214 - GFF3328 0.32 -1.4 154,214 - GFF3328 0.32 -1.2 154,214 - GFF3328 0.32 +1.3 154,366 + GFF3328 0.46 -0.7 154,417 + GFF3328 0.50 -0.3 154,417 + GFF3328 0.50 -0.2 154,417 + GFF3328 0.50 -1.2 154,418 - GFF3328 0.50 +2.1 154,418 - GFF3328 0.50 -1.0 154,490 - GFF3328 0.57 +0.9 154,490 - GFF3328 0.57 +1.3
Or see this region's nucleotide sequence