Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3244 and GFF3245 overlap by 4 nucleotides GFF3245 and GFF3246 are separated by 57 nucleotides GFF3246 and GFF3247 are separated by 123 nucleotides
GFF3244 - Spermidine synthase N-terminal extension / Spermidine synthase (EC 2.5.1.16), at 58,862 to 60,505
GFF3244
GFF3245 - hypothetical protein, at 60,502 to 60,720
GFF3245
GFF3246 - hypothetical protein, at 60,778 to 62,268
GFF3246
GFF3247 - FIG027190: Putative transmembrane protein, at 62,392 to 63,441
GFF3247
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 59.787 kb on + strand, within GFF3244 at 59.788 kb on - strand, within GFF3244 at 59.788 kb on - strand, within GFF3244 at 60.033 kb on + strand, within GFF3244 at 60.033 kb on + strand, within GFF3244 at 60.033 kb on + strand, within GFF3244 at 60.034 kb on - strand, within GFF3244 at 60.180 kb on + strand, within GFF3244 at 60.181 kb on - strand, within GFF3244 at 60.280 kb on - strand, within GFF3244 at 60.318 kb on + strand, within GFF3244 at 60.318 kb on + strand, within GFF3244 at 60.319 kb on - strand, within GFF3244 at 60.319 kb on - strand, within GFF3244 at 60.319 kb on - strand, within GFF3244 at 60.319 kb on - strand, within GFF3244 at 60.319 kb on - strand, within GFF3244 at 60.366 kb on + strand at 60.366 kb on + strand at 60.366 kb on + strand at 60.367 kb on - strand at 60.367 kb on - strand at 60.396 kb on + strand at 60.397 kb on - strand at 60.608 kb on + strand, within GFF3245 at 60.609 kb on - strand, within GFF3245 at 60.609 kb on - strand, within GFF3245 at 60.609 kb on - strand, within GFF3245 at 60.609 kb on - strand, within GFF3245 at 60.609 kb on - strand, within GFF3245 at 60.671 kb on + strand, within GFF3245 at 60.671 kb on + strand, within GFF3245 at 60.672 kb on - strand, within GFF3245 at 60.736 kb on + strand at 60.736 kb on + strand at 60.736 kb on + strand at 60.736 kb on + strand at 60.737 kb on - strand at 60.737 kb on - strand at 60.737 kb on - strand at 60.739 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.747 kb on + strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.748 kb on - strand at 60.803 kb on + strand at 60.804 kb on - strand at 61.100 kb on + strand, within GFF3246 at 61.100 kb on + strand, within GFF3246 at 61.101 kb on - strand, within GFF3246 at 61.142 kb on + strand, within GFF3246 at 61.143 kb on - strand, within GFF3246 at 61.143 kb on - strand, within GFF3246 at 61.143 kb on - strand, within GFF3246 at 61.160 kb on + strand, within GFF3246 at 61.160 kb on + strand, within GFF3246 at 61.160 kb on + strand, within GFF3246 at 61.178 kb on + strand, within GFF3246 at 61.179 kb on - strand, within GFF3246 at 61.179 kb on - strand, within GFF3246 at 61.179 kb on - strand, within GFF3246 at 61.179 kb on - strand, within GFF3246 at 61.184 kb on + strand, within GFF3246 at 61.184 kb on + strand, within GFF3246 at 61.184 kb on + strand, within GFF3246 at 61.184 kb on + strand, within GFF3246 at 61.185 kb on - strand, within GFF3246 at 61.185 kb on - strand, within GFF3246 at 61.185 kb on - strand, within GFF3246 at 61.185 kb on - strand, within GFF3246 at 61.185 kb on - strand, within GFF3246 at 61.185 kb on - strand, within GFF3246 at 61.211 kb on + strand, within GFF3246 at 61.211 kb on + strand, within GFF3246 at 61.211 kb on + strand, within GFF3246 at 61.211 kb on + strand, within GFF3246 at 61.211 kb on + strand, within GFF3246 at 61.211 kb on + strand, within GFF3246 at 61.212 kb on - strand, within GFF3246 at 61.322 kb on + strand, within GFF3246 at 61.322 kb on + strand, within GFF3246 at 61.322 kb on + strand, within GFF3246 at 61.323 kb on - strand, within GFF3246 at 61.323 kb on - strand, within GFF3246 at 61.323 kb on - strand, within GFF3246 at 61.323 kb on - strand, within GFF3246 at 61.323 kb on - strand, within GFF3246 at 61.323 kb on - strand, within GFF3246 at 61.331 kb on + strand, within GFF3246 at 61.332 kb on - strand, within GFF3246 at 61.332 kb on - strand, within GFF3246 at 61.332 kb on - strand, within GFF3246 at 61.679 kb on + strand, within GFF3246 at 61.703 kb on + strand, within GFF3246 at 61.704 kb on - strand, within GFF3246 at 61.835 kb on + strand, within GFF3246 at 61.835 kb on + strand, within GFF3246 at 61.835 kb on + strand, within GFF3246 at 61.835 kb on + strand, within GFF3246 at 61.836 kb on - strand, within GFF3246 at 61.836 kb on - strand, within GFF3246 at 61.836 kb on - strand, within GFF3246 at 61.836 kb on - strand, within GFF3246 at 61.836 kb on - strand, within GFF3246 at 61.836 kb on - strand, within GFF3246 at 61.861 kb on - strand, within GFF3246 at 61.861 kb on - strand, within GFF3246 at 61.861 kb on - strand, within GFF3246 at 61.928 kb on + strand, within GFF3246 at 61.928 kb on + strand, within GFF3246 at 62.009 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.238 kb on - strand at 62.240 kb on + strand at 62.241 kb on - strand at 62.241 kb on - strand at 62.241 kb on - strand at 62.241 kb on - strand at 62.241 kb on - strand at 62.241 kb on - strand at 62.270 kb on + strand at 62.307 kb on - strand at 62.308 kb on - strand at 62.337 kb on + strand at 62.338 kb on - strand at 62.364 kb on - strand at 62.364 kb on - strand at 62.393 kb on + strand at 62.394 kb on - strand at 62.394 kb on - strand at 62.703 kb on - strand, within GFF3247 at 62.703 kb on - strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.155 kb on + strand, within GFF3247 at 63.155 kb on + strand, within GFF3247 at 63.155 kb on + strand, within GFF3247 at 63.156 kb on - strand, within GFF3247 at 63.207 kb on - strand, within GFF3247 at 63.207 kb on - strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 59,787 + GFF3244 0.56 +0.5 59,788 - GFF3244 0.56 -0.3 59,788 - GFF3244 0.56 +0.6 60,033 + GFF3244 0.71 -3.9 60,033 + GFF3244 0.71 +1.0 60,033 + GFF3244 0.71 +0.7 60,034 - GFF3244 0.71 -1.6 60,180 + GFF3244 0.80 -1.6 60,181 - GFF3244 0.80 -0.9 60,280 - GFF3244 0.86 -0.5 60,318 + GFF3244 0.89 -1.6 60,318 + GFF3244 0.89 -0.9 60,319 - GFF3244 0.89 -0.5 60,319 - GFF3244 0.89 +1.6 60,319 - GFF3244 0.89 -0.7 60,319 - GFF3244 0.89 -3.4 60,319 - GFF3244 0.89 +0.6 60,366 + +2.0 60,366 + -1.8 60,366 + -0.3 60,367 - +1.0 60,367 - +0.7 60,396 + -0.2 60,397 - -0.3 60,608 + GFF3245 0.48 +0.6 60,609 - GFF3245 0.49 +0.4 60,609 - GFF3245 0.49 -2.5 60,609 - GFF3245 0.49 -0.7 60,609 - GFF3245 0.49 -2.4 60,609 - GFF3245 0.49 -1.2 60,671 + GFF3245 0.77 +0.3 60,671 + GFF3245 0.77 -0.7 60,672 - GFF3245 0.78 -1.3 60,736 + -0.1 60,736 + -0.6 60,736 + +0.7 60,736 + +2.8 60,737 - -4.0 60,737 - -0.3 60,737 - -0.5 60,739 + -1.0 60,747 + -1.1 60,747 + -0.2 60,747 + -1.9 60,747 + +0.1 60,747 + -1.2 60,747 + -1.9 60,747 + -1.2 60,747 + +0.7 60,747 + -0.4 60,747 + -0.4 60,748 - -1.7 60,748 - +1.3 60,748 - -1.7 60,748 - +1.1 60,748 - +0.4 60,748 - -0.2 60,748 - +0.4 60,748 - +3.9 60,748 - -1.0 60,803 + +0.0 60,804 - -2.6 61,100 + GFF3246 0.22 +1.5 61,100 + GFF3246 0.22 -1.0 61,101 - GFF3246 0.22 -2.8 61,142 + GFF3246 0.24 -0.9 61,143 - GFF3246 0.24 -1.9 61,143 - GFF3246 0.24 +0.5 61,143 - GFF3246 0.24 -0.1 61,160 + GFF3246 0.26 -0.0 61,160 + GFF3246 0.26 -1.2 61,160 + GFF3246 0.26 +0.3 61,178 + GFF3246 0.27 -1.1 61,179 - GFF3246 0.27 +0.7 61,179 - GFF3246 0.27 -2.2 61,179 - GFF3246 0.27 +1.1 61,179 - GFF3246 0.27 -0.1 61,184 + GFF3246 0.27 -1.6 61,184 + GFF3246 0.27 -1.9 61,184 + GFF3246 0.27 +2.3 61,184 + GFF3246 0.27 +1.7 61,185 - GFF3246 0.27 +1.9 61,185 - GFF3246 0.27 -1.8 61,185 - GFF3246 0.27 -1.8 61,185 - GFF3246 0.27 +0.1 61,185 - GFF3246 0.27 +1.1 61,185 - GFF3246 0.27 +1.3 61,211 + GFF3246 0.29 +0.2 61,211 + GFF3246 0.29 -1.3 61,211 + GFF3246 0.29 +0.6 61,211 + GFF3246 0.29 -0.3 61,211 + GFF3246 0.29 -0.5 61,211 + GFF3246 0.29 -1.2 61,212 - GFF3246 0.29 +2.4 61,322 + GFF3246 0.36 -2.7 61,322 + GFF3246 0.36 +1.3 61,322 + GFF3246 0.36 +0.5 61,323 - GFF3246 0.37 +1.3 61,323 - GFF3246 0.37 -3.7 61,323 - GFF3246 0.37 -1.5 61,323 - GFF3246 0.37 +0.7 61,323 - GFF3246 0.37 +0.6 61,323 - GFF3246 0.37 -1.3 61,331 + GFF3246 0.37 -2.5 61,332 - GFF3246 0.37 -1.8 61,332 - GFF3246 0.37 -3.2 61,332 - GFF3246 0.37 +1.3 61,679 + GFF3246 0.60 -1.2 61,703 + GFF3246 0.62 -1.0 61,704 - GFF3246 0.62 -0.6 61,835 + GFF3246 0.71 -0.1 61,835 + GFF3246 0.71 -1.1 61,835 + GFF3246 0.71 -0.0 61,835 + GFF3246 0.71 -0.6 61,836 - GFF3246 0.71 +0.4 61,836 - GFF3246 0.71 +2.2 61,836 - GFF3246 0.71 -0.5 61,836 - GFF3246 0.71 +0.0 61,836 - GFF3246 0.71 -1.3 61,836 - GFF3246 0.71 -0.4 61,861 - GFF3246 0.73 -0.8 61,861 - GFF3246 0.73 -2.2 61,861 - GFF3246 0.73 +0.5 61,928 + GFF3246 0.77 -2.5 61,928 + GFF3246 0.77 +0.5 62,009 + GFF3246 0.83 +0.4 62,015 + GFF3246 0.83 -0.7 62,015 + GFF3246 0.83 -2.0 62,015 + GFF3246 0.83 -0.7 62,015 + GFF3246 0.83 -0.1 62,015 + GFF3246 0.83 -1.8 62,015 + GFF3246 0.83 -1.3 62,015 + GFF3246 0.83 -0.8 62,016 - GFF3246 0.83 +0.8 62,016 - GFF3246 0.83 -3.3 62,016 - GFF3246 0.83 +2.2 62,016 - GFF3246 0.83 -1.1 62,016 - GFF3246 0.83 -1.5 62,016 - GFF3246 0.83 -2.7 62,016 - GFF3246 0.83 +0.7 62,016 - GFF3246 0.83 +0.9 62,238 - -0.2 62,240 + +1.0 62,241 - +0.3 62,241 - -1.3 62,241 - -1.9 62,241 - -2.2 62,241 - +0.1 62,241 - -2.1 62,270 + -2.5 62,307 - -0.4 62,308 - +2.4 62,337 + +1.1 62,338 - +0.4 62,364 - -2.0 62,364 - +0.4 62,393 + -1.8 62,394 - +1.1 62,394 - +1.4 62,703 - GFF3247 0.30 -1.3 62,703 - GFF3247 0.30 +2.3 62,984 + GFF3247 0.56 +0.4 62,984 + GFF3247 0.56 +0.3 62,984 + GFF3247 0.56 +0.7 62,984 + GFF3247 0.56 -0.0 62,984 + GFF3247 0.56 +0.5 62,984 + GFF3247 0.56 -1.0 62,984 + GFF3247 0.56 -2.3 62,984 + GFF3247 0.56 +1.2 62,984 + GFF3247 0.56 -2.2 62,984 + GFF3247 0.56 +0.6 62,984 + GFF3247 0.56 +0.3 62,984 + GFF3247 0.56 +0.0 62,984 + GFF3247 0.56 +0.2 62,985 - GFF3247 0.56 -2.8 62,985 - GFF3247 0.56 -2.2 62,985 - GFF3247 0.56 -1.5 62,985 - GFF3247 0.56 -1.5 62,985 - GFF3247 0.56 -1.3 62,985 - GFF3247 0.56 -0.7 62,985 - GFF3247 0.56 -0.0 62,985 - GFF3247 0.56 +0.8 62,985 - GFF3247 0.56 -0.9 62,985 - GFF3247 0.56 +2.3 62,985 - GFF3247 0.56 +0.0 63,047 + GFF3247 0.62 -1.6 63,047 + GFF3247 0.62 -0.2 63,047 + GFF3247 0.62 +0.8 63,047 + GFF3247 0.62 -1.9 63,047 + GFF3247 0.62 -2.9 63,047 + GFF3247 0.62 +0.3 63,047 + GFF3247 0.62 +0.3 63,047 + GFF3247 0.62 -0.1 63,047 + GFF3247 0.62 -3.7 63,047 + GFF3247 0.62 +0.6 63,047 + GFF3247 0.62 -1.8 63,047 + GFF3247 0.62 -0.3 63,048 - GFF3247 0.62 -0.6 63,048 - GFF3247 0.62 +1.0 63,048 - GFF3247 0.62 +2.3 63,048 - GFF3247 0.62 -2.1 63,048 - GFF3247 0.62 -0.2 63,048 - GFF3247 0.62 -0.5 63,048 - GFF3247 0.62 -0.2 63,155 + GFF3247 0.73 +1.3 63,155 + GFF3247 0.73 -1.7 63,155 + GFF3247 0.73 -1.8 63,156 - GFF3247 0.73 +0.1 63,207 - GFF3247 0.78 +0.1 63,207 - GFF3247 0.78 +0.3 63,242 + GFF3247 0.81 +0.9 63,242 + GFF3247 0.81 -2.2 63,242 + GFF3247 0.81 +1.0 63,242 + GFF3247 0.81 +1.0 63,242 + GFF3247 0.81 -0.2 63,242 + GFF3247 0.81 -1.4 63,242 + GFF3247 0.81 +0.2 63,242 + GFF3247 0.81 -1.4 63,242 + GFF3247 0.81 -1.0 63,242 + GFF3247 0.81 -0.7 63,242 + GFF3247 0.81 -2.2 63,242 + GFF3247 0.81 +0.3 63,242 + GFF3247 0.81 +0.2 63,242 + GFF3247 0.81 -1.9 63,243 - GFF3247 0.81 -0.1 63,243 - GFF3247 0.81 -0.8 63,243 - GFF3247 0.81 -1.0 63,243 - GFF3247 0.81 -2.1 63,243 - GFF3247 0.81 -0.4 63,243 - GFF3247 0.81 +1.8 63,243 - GFF3247 0.81 +1.7 63,243 - GFF3247 0.81 -3.1 63,243 - GFF3247 0.81 -1.5 63,243 - GFF3247 0.81 -0.1 63,243 - GFF3247 0.81 +1.3 63,243 - GFF3247 0.81 -1.6 63,243 - GFF3247 0.81 -0.5 63,243 - GFF3247 0.81 -1.0 63,243 - GFF3247 0.81 -3.3 63,243 - GFF3247 0.81 -2.6
Or see this region's nucleotide sequence