Strain Fitness in Variovorax sp. SCN45 around GFF3064

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3063 and GFF3064 are separated by 137 nucleotidesGFF3064 and GFF3065 are separated by 4 nucleotidesGFF3065 and GFF3066 are separated by 46 nucleotides GFF3063 - mandelate racemase/muconate lactonizing enzyme family protein, at 496,691 to 497,857 GFF3063 GFF3064 - Exodeoxyribonuclease III (EC 3.1.11.2), at 497,995 to 498,780 GFF3064 GFF3065 - hypothetical protein, at 498,785 to 499,336 GFF3065 GFF3066 - Nitrogen regulation protein NR(I), GlnG (=NtrC), at 499,383 to 500,918 GFF3066 Position (kb) 497 498 499Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 497.082 kb on - strand, within GFF3063at 497.082 kb on - strand, within GFF3063at 497.082 kb on - strand, within GFF3063at 497.153 kb on + strand, within GFF3063at 497.154 kb on - strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.157 kb on - strand, within GFF3063at 497.157 kb on - strand, within GFF3063at 497.157 kb on - strand, within GFF3063at 497.157 kb on - strand, within GFF3063at 497.157 kb on - strand, within GFF3063at 497.159 kb on + strand, within GFF3063at 497.159 kb on + strand, within GFF3063at 497.204 kb on + strand, within GFF3063at 497.204 kb on + strand, within GFF3063at 497.204 kb on + strand, within GFF3063at 497.220 kb on - strand, within GFF3063at 497.399 kb on + strand, within GFF3063at 497.400 kb on - strand, within GFF3063at 497.427 kb on - strand, within GFF3063at 497.456 kb on + strand, within GFF3063at 497.456 kb on + strand, within GFF3063at 497.457 kb on - strand, within GFF3063at 497.457 kb on - strand, within GFF3063at 497.457 kb on - strand, within GFF3063at 497.457 kb on - strand, within GFF3063at 497.576 kb on + strand, within GFF3063at 497.576 kb on + strand, within GFF3063at 497.577 kb on - strand, within GFF3063at 497.577 kb on - strand, within GFF3063at 497.714 kb on + strand, within GFF3063at 497.714 kb on + strand, within GFF3063at 497.714 kb on + strand, within GFF3063at 497.714 kb on + strand, within GFF3063at 497.715 kb on - strand, within GFF3063at 497.736 kb on - strand, within GFF3063at 497.736 kb on - strand, within GFF3063at 497.774 kb on + strandat 497.774 kb on + strandat 497.775 kb on - strandat 497.775 kb on - strandat 497.856 kb on - strandat 497.856 kb on - strandat 497.892 kb on + strandat 497.892 kb on + strandat 497.893 kb on - strandat 497.893 kb on - strandat 497.942 kb on + strandat 497.942 kb on + strandat 497.943 kb on - strandat 497.943 kb on - strandat 497.943 kb on - strandat 497.943 kb on - strandat 498.002 kb on + strandat 498.002 kb on + strandat 498.002 kb on + strandat 498.002 kb on + strandat 498.002 kb on + strandat 498.003 kb on - strandat 498.003 kb on - strandat 498.006 kb on + strandat 498.006 kb on + strandat 498.006 kb on + strandat 498.007 kb on - strandat 498.007 kb on - strandat 498.007 kb on - strandat 498.007 kb on - strandat 498.007 kb on - strandat 498.007 kb on - strandat 498.358 kb on + strand, within GFF3064at 498.359 kb on - strand, within GFF3064at 498.359 kb on - strand, within GFF3064at 498.610 kb on + strand, within GFF3064at 498.610 kb on + strand, within GFF3064at 498.611 kb on - strand, within GFF3064at 498.611 kb on - strand, within GFF3064at 499.043 kb on + strand, within GFF3065at 499.043 kb on + strand, within GFF3065at 499.043 kb on + strand, within GFF3065at 499.043 kb on + strand, within GFF3065at 499.044 kb on - strand, within GFF3065at 499.044 kb on - strand, within GFF3065at 499.044 kb on - strand, within GFF3065at 499.052 kb on + strand, within GFF3065at 499.053 kb on - strand, within GFF3065at 499.053 kb on - strand, within GFF3065at 499.067 kb on + strand, within GFF3065at 499.067 kb on + strand, within GFF3065at 499.067 kb on + strand, within GFF3065at 499.067 kb on + strand, within GFF3065at 499.068 kb on - strand, within GFF3065at 499.068 kb on - strand, within GFF3065at 499.068 kb on - strand, within GFF3065at 499.094 kb on + strand, within GFF3065at 499.094 kb on + strand, within GFF3065at 499.095 kb on - strand, within GFF3065at 499.095 kb on - strand, within GFF3065at 499.259 kb on + strand, within GFF3065at 499.259 kb on + strand, within GFF3065at 499.259 kb on + strand, within GFF3065at 499.259 kb on + strand, within GFF3065at 499.259 kb on + strand, within GFF3065at 499.260 kb on - strand, within GFF3065at 499.260 kb on - strand, within GFF3065at 499.260 kb on - strand, within GFF3065at 499.260 kb on - strand, within GFF3065at 499.260 kb on - strand, within GFF3065at 499.335 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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497,082 - GFF3063 0.34 -0.8
497,082 - GFF3063 0.34 -1.0
497,082 - GFF3063 0.34 +3.2
497,153 + GFF3063 0.40 -1.7
497,154 - GFF3063 0.40 -0.8
497,156 + GFF3063 0.40 -2.0
497,156 + GFF3063 0.40 +0.5
497,156 + GFF3063 0.40 -3.2
497,156 + GFF3063 0.40 -1.0
497,156 + GFF3063 0.40 -1.5
497,156 + GFF3063 0.40 +0.8
497,156 + GFF3063 0.40 +0.1
497,156 + GFF3063 0.40 -1.8
497,157 - GFF3063 0.40 +1.4
497,157 - GFF3063 0.40 -1.4
497,157 - GFF3063 0.40 -2.7
497,157 - GFF3063 0.40 -2.2
497,157 - GFF3063 0.40 -1.1
497,159 + GFF3063 0.40 -1.5
497,159 + GFF3063 0.40 -2.6
497,204 + GFF3063 0.44 -0.7
497,204 + GFF3063 0.44 +1.0
497,204 + GFF3063 0.44 -2.4
497,220 - GFF3063 0.45 -3.1
497,399 + GFF3063 0.61 -2.2
497,400 - GFF3063 0.61 -2.0
497,427 - GFF3063 0.63 -1.1
497,456 + GFF3063 0.66 -3.1
497,456 + GFF3063 0.66 +0.6
497,457 - GFF3063 0.66 -0.7
497,457 - GFF3063 0.66 -0.4
497,457 - GFF3063 0.66 -0.0
497,457 - GFF3063 0.66 -0.9
497,576 + GFF3063 0.76 -1.5
497,576 + GFF3063 0.76 -1.4
497,577 - GFF3063 0.76 -2.5
497,577 - GFF3063 0.76 +0.2
497,714 + GFF3063 0.88 +0.3
497,714 + GFF3063 0.88 -2.0
497,714 + GFF3063 0.88 -0.2
497,714 + GFF3063 0.88 +0.5
497,715 - GFF3063 0.88 -0.4
497,736 - GFF3063 0.90 +1.3
497,736 - GFF3063 0.90 -2.7
497,774 + -0.5
497,774 + +0.6
497,775 - +2.8
497,775 - -0.1
497,856 - +0.2
497,856 - -2.2
497,892 + -2.3
497,892 + +0.5
497,893 - -0.4
497,893 - -2.1
497,942 + -2.0
497,942 + +2.6
497,943 - +0.9
497,943 - -1.2
497,943 - -2.3
497,943 - -0.8
498,002 + -2.6
498,002 + +0.3
498,002 + +0.4
498,002 + -2.2
498,002 + -1.2
498,003 - +1.8
498,003 - -4.0
498,006 + -1.4
498,006 + -0.7
498,006 + -2.2
498,007 - -1.4
498,007 - +1.5
498,007 - -0.4
498,007 - +1.2
498,007 - -1.0
498,007 - +2.4
498,358 + GFF3064 0.46 +0.2
498,359 - GFF3064 0.46 -0.8
498,359 - GFF3064 0.46 -0.2
498,610 + GFF3064 0.78 -0.5
498,610 + GFF3064 0.78 -3.4
498,611 - GFF3064 0.78 -2.4
498,611 - GFF3064 0.78 -1.4
499,043 + GFF3065 0.47 -1.8
499,043 + GFF3065 0.47 -1.5
499,043 + GFF3065 0.47 +2.2
499,043 + GFF3065 0.47 -3.4
499,044 - GFF3065 0.47 -3.0
499,044 - GFF3065 0.47 +1.4
499,044 - GFF3065 0.47 +0.2
499,052 + GFF3065 0.48 +0.3
499,053 - GFF3065 0.49 +2.4
499,053 - GFF3065 0.49 +1.8
499,067 + GFF3065 0.51 +0.3
499,067 + GFF3065 0.51 +1.3
499,067 + GFF3065 0.51 +1.6
499,067 + GFF3065 0.51 +1.8
499,068 - GFF3065 0.51 +0.0
499,068 - GFF3065 0.51 -1.4
499,068 - GFF3065 0.51 +1.1
499,094 + GFF3065 0.56 -3.3
499,094 + GFF3065 0.56 -0.9
499,095 - GFF3065 0.56 +0.2
499,095 - GFF3065 0.56 -0.8
499,259 + GFF3065 0.86 +0.3
499,259 + GFF3065 0.86 +0.1
499,259 + GFF3065 0.86 +0.9
499,259 + GFF3065 0.86 +1.2
499,259 + GFF3065 0.86 -1.7
499,260 - GFF3065 0.86 -2.9
499,260 - GFF3065 0.86 +0.2
499,260 - GFF3065 0.86 +2.3
499,260 - GFF3065 0.86 +1.3
499,260 - GFF3065 0.86 -0.8
499,335 - +1.2

Or see this region's nucleotide sequence