Strain Fitness in Variovorax sp. SCN45 around GFF306

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF305 and GFF306 are separated by 55 nucleotidesGFF306 and GFF307 overlap by 34 nucleotides GFF305 - uncharacterized domain / RidA/YER057c/UK114 superfamily, group 5, at 338,177 to 339,214 GFF305 GFF306 - FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 339,270 to 340,067 GFF306 GFF307 - FIG143263: Glycosyl transferase, at 340,034 to 340,810 GFF307 Position (kb) 339 340 341Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 338.291 kb on + strand, within GFF305at 338.392 kb on + strand, within GFF305at 338.393 kb on - strand, within GFF305at 338.393 kb on - strand, within GFF305at 338.513 kb on + strand, within GFF305at 338.514 kb on - strand, within GFF305at 338.514 kb on - strand, within GFF305at 338.514 kb on - strand, within GFF305at 338.514 kb on - strand, within GFF305at 338.576 kb on + strand, within GFF305at 338.576 kb on + strand, within GFF305at 338.576 kb on + strand, within GFF305at 338.576 kb on + strand, within GFF305at 338.576 kb on + strand, within GFF305at 338.577 kb on - strand, within GFF305at 338.577 kb on - strand, within GFF305at 338.577 kb on - strand, within GFF305at 338.577 kb on - strand, within GFF305at 338.577 kb on - strand, within GFF305at 338.577 kb on - strand, within GFF305at 338.766 kb on + strand, within GFF305at 338.768 kb on + strand, within GFF305at 338.792 kb on + strand, within GFF305at 338.810 kb on + strand, within GFF305at 338.810 kb on + strand, within GFF305at 338.810 kb on + strand, within GFF305at 338.811 kb on - strand, within GFF305at 338.811 kb on - strand, within GFF305at 338.811 kb on - strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.041 kb on + strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.042 kb on - strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.045 kb on + strand, within GFF305at 339.046 kb on - strand, within GFF305at 339.046 kb on - strand, within GFF305at 339.046 kb on - strand, within GFF305at 339.046 kb on - strand, within GFF305at 339.046 kb on - strand, within GFF305at 339.097 kb on - strand, within GFF305at 339.131 kb on + strandat 339.131 kb on + strandat 339.132 kb on - strandat 339.132 kb on - strandat 339.132 kb on - strandat 339.322 kb on - strandat 339.384 kb on + strand, within GFF306at 339.384 kb on + strand, within GFF306at 339.384 kb on + strand, within GFF306at 339.385 kb on - strand, within GFF306at 339.444 kb on + strand, within GFF306at 339.445 kb on - strand, within GFF306at 339.666 kb on + strand, within GFF306at 339.666 kb on + strand, within GFF306at 339.666 kb on + strand, within GFF306at 339.666 kb on + strand, within GFF306at 339.666 kb on + strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.667 kb on - strand, within GFF306at 339.865 kb on - strand, within GFF306at 339.865 kb on - strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.987 kb on + strand, within GFF306at 339.988 kb on - strandat 339.988 kb on - strandat 339.988 kb on - strandat 340.076 kb on + strandat 340.076 kb on + strandat 340.076 kb on + strandat 340.076 kb on + strandat 340.077 kb on - strandat 340.077 kb on - strandat 340.077 kb on - strandat 340.077 kb on - strandat 340.137 kb on + strand, within GFF307at 340.470 kb on + strand, within GFF307at 340.470 kb on + strand, within GFF307at 340.470 kb on + strand, within GFF307at 340.470 kb on + strand, within GFF307at 340.471 kb on - strand, within GFF307at 340.471 kb on - strand, within GFF307at 340.471 kb on - strand, within GFF307at 340.505 kb on + strand, within GFF307at 340.506 kb on - strand, within GFF307at 340.652 kb on + strand, within GFF307at 340.652 kb on + strand, within GFF307at 340.652 kb on + strand, within GFF307at 340.652 kb on + strand, within GFF307at 340.653 kb on - strand, within GFF307at 340.653 kb on - strand, within GFF307at 340.840 kb on - strandat 340.846 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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338,291 + GFF305 0.11 +0.5
338,392 + GFF305 0.21 +1.5
338,393 - GFF305 0.21 -0.8
338,393 - GFF305 0.21 +0.5
338,513 + GFF305 0.32 +0.3
338,514 - GFF305 0.32 +0.5
338,514 - GFF305 0.32 -2.2
338,514 - GFF305 0.32 -0.9
338,514 - GFF305 0.32 -0.1
338,576 + GFF305 0.38 +2.0
338,576 + GFF305 0.38 +0.5
338,576 + GFF305 0.38 -2.0
338,576 + GFF305 0.38 -1.3
338,576 + GFF305 0.38 +2.1
338,577 - GFF305 0.39 +1.0
338,577 - GFF305 0.39 -3.5
338,577 - GFF305 0.39 -2.5
338,577 - GFF305 0.39 +1.3
338,577 - GFF305 0.39 +2.1
338,577 - GFF305 0.39 +2.2
338,766 + GFF305 0.57 +0.3
338,768 + GFF305 0.57 -2.3
338,792 + GFF305 0.59 -1.7
338,810 + GFF305 0.61 -0.6
338,810 + GFF305 0.61 +1.5
338,810 + GFF305 0.61 -2.5
338,811 - GFF305 0.61 -0.8
338,811 - GFF305 0.61 -0.6
338,811 - GFF305 0.61 +0.8
339,041 + GFF305 0.83 +0.0
339,041 + GFF305 0.83 -1.9
339,041 + GFF305 0.83 +0.2
339,041 + GFF305 0.83 +0.2
339,041 + GFF305 0.83 +0.6
339,041 + GFF305 0.83 +0.5
339,041 + GFF305 0.83 -0.6
339,041 + GFF305 0.83 +2.2
339,042 - GFF305 0.83 -2.9
339,042 - GFF305 0.83 -1.5
339,042 - GFF305 0.83 -1.3
339,042 - GFF305 0.83 -1.9
339,042 - GFF305 0.83 -0.0
339,042 - GFF305 0.83 +1.7
339,042 - GFF305 0.83 +0.8
339,042 - GFF305 0.83 +0.9
339,045 + GFF305 0.84 -0.4
339,045 + GFF305 0.84 -1.9
339,045 + GFF305 0.84 -3.2
339,045 + GFF305 0.84 +1.1
339,045 + GFF305 0.84 +1.4
339,045 + GFF305 0.84 -0.0
339,045 + GFF305 0.84 +0.9
339,045 + GFF305 0.84 -2.8
339,046 - GFF305 0.84 -1.0
339,046 - GFF305 0.84 -1.6
339,046 - GFF305 0.84 -2.0
339,046 - GFF305 0.84 -0.5
339,046 - GFF305 0.84 +1.2
339,097 - GFF305 0.89 +1.8
339,131 + -0.0
339,131 + -3.3
339,132 - -1.3
339,132 - +0.7
339,132 - -2.3
339,322 - +1.0
339,384 + GFF306 0.14 +1.1
339,384 + GFF306 0.14 -1.5
339,384 + GFF306 0.14 -1.6
339,385 - GFF306 0.14 -3.0
339,444 + GFF306 0.22 -0.0
339,445 - GFF306 0.22 -0.8
339,666 + GFF306 0.50 -3.1
339,666 + GFF306 0.50 -1.2
339,666 + GFF306 0.50 +0.8
339,666 + GFF306 0.50 +0.6
339,666 + GFF306 0.50 +0.4
339,667 - GFF306 0.50 -0.5
339,667 - GFF306 0.50 -2.8
339,667 - GFF306 0.50 -1.8
339,667 - GFF306 0.50 -0.5
339,667 - GFF306 0.50 -0.4
339,667 - GFF306 0.50 -1.0
339,667 - GFF306 0.50 -0.0
339,667 - GFF306 0.50 +0.6
339,667 - GFF306 0.50 +0.7
339,667 - GFF306 0.50 -0.5
339,865 - GFF306 0.75 -3.2
339,865 - GFF306 0.75 -0.0
339,987 + GFF306 0.90 -2.5
339,987 + GFF306 0.90 +0.2
339,987 + GFF306 0.90 -2.2
339,987 + GFF306 0.90 -3.3
339,987 + GFF306 0.90 -1.5
339,987 + GFF306 0.90 -3.5
339,987 + GFF306 0.90 -0.0
339,988 - -0.3
339,988 - -1.3
339,988 - -2.0
340,076 + -0.3
340,076 + +0.2
340,076 + -1.3
340,076 + -1.0
340,077 - -2.5
340,077 - -1.3
340,077 - +0.1
340,077 - -1.8
340,137 + GFF307 0.13 -3.7
340,470 + GFF307 0.56 -0.5
340,470 + GFF307 0.56 -3.5
340,470 + GFF307 0.56 +0.4
340,470 + GFF307 0.56 +0.5
340,471 - GFF307 0.56 +3.0
340,471 - GFF307 0.56 +0.1
340,471 - GFF307 0.56 -2.8
340,505 + GFF307 0.61 -0.0
340,506 - GFF307 0.61 +0.3
340,652 + GFF307 0.80 +1.0
340,652 + GFF307 0.80 -0.3
340,652 + GFF307 0.80 +0.6
340,652 + GFF307 0.80 -2.3
340,653 - GFF307 0.80 -0.6
340,653 - GFF307 0.80 +0.3
340,840 - -1.7
340,846 + +1.1

Or see this region's nucleotide sequence