Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF29 and GFF30 are separated by 117 nucleotides GFF30 and GFF31 overlap by 4 nucleotides GFF31 and GFF32 overlap by 4 nucleotides
GFF29 - tRNA-modifying protein YgfZ, at 33,392 to 34,327
GFF29
GFF30 - Murein endolytic transglycosylase MltG, at 34,445 to 35,467
GFF30
GFF31 - Thymidylate kinase (EC 2.7.4.9), at 35,464 to 36,135
GFF31
GFF32 - DNA polymerase III delta prime subunit (EC 2.7.7.7), at 36,132 to 37,145
GFF32
Position (kb) 34
35
36 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 34.336 kb on + strand at 34.336 kb on + strand at 34.931 kb on + strand, within GFF30 at 34.931 kb on + strand, within GFF30 at 34.937 kb on + strand, within GFF30 at 35.183 kb on + strand, within GFF30 at 35.183 kb on + strand, within GFF30 at 35.183 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.255 kb on + strand, within GFF30 at 35.348 kb on + strand, within GFF30
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 34,336 + +0.8 34,336 + +2.4 34,931 + GFF30 0.48 +0.1 34,931 + GFF30 0.48 -1.3 34,937 + GFF30 0.48 -0.8 35,183 + GFF30 0.72 -0.6 35,183 + GFF30 0.72 -0.5 35,183 + GFF30 0.72 -0.5 35,255 + GFF30 0.79 -0.5 35,255 + GFF30 0.79 +0.5 35,255 + GFF30 0.79 -0.5 35,255 + GFF30 0.79 -1.8 35,255 + GFF30 0.79 +0.3 35,255 + GFF30 0.79 +0.1 35,255 + GFF30 0.79 -1.5 35,255 + GFF30 0.79 +0.6 35,255 + GFF30 0.79 -3.8 35,255 + GFF30 0.79 +1.0 35,348 + GFF30 0.88 -1.3
Or see this region's nucleotide sequence