Strain Fitness in Variovorax sp. SCN45 around GFF2884

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2883 and GFF2884 overlap by 4 nucleotidesGFF2884 and GFF2885 are separated by 101 nucleotides GFF2883 - CaiB/BaiF family protein, at 309,100 to 310,305 GFF2883 GFF2884 - Pyruvate:Oxaloacetate transcarboxylase domain protein, at 310,302 to 311,249 GFF2884 GFF2885 - Transcriptional regulator, LysR family, at 311,351 to 312,253 GFF2885 Position (kb) 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 309.335 kb on + strand, within GFF2883at 309.335 kb on + strand, within GFF2883at 309.335 kb on + strand, within GFF2883at 309.335 kb on + strand, within GFF2883at 309.587 kb on - strand, within GFF2883at 309.587 kb on - strand, within GFF2883at 309.602 kb on + strand, within GFF2883at 309.602 kb on + strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.662 kb on + strand, within GFF2883at 309.662 kb on + strand, within GFF2883at 309.663 kb on - strand, within GFF2883at 309.663 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.989 kb on + strand, within GFF2883at 310.299 kb on + strandat 310.299 kb on + strandat 310.300 kb on - strandat 310.300 kb on - strandat 310.300 kb on - strandat 310.300 kb on - strandat 310.300 kb on - strandat 310.560 kb on + strand, within GFF2884at 310.560 kb on + strand, within GFF2884at 310.560 kb on + strand, within GFF2884at 310.560 kb on + strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.576 kb on + strand, within GFF2884at 310.576 kb on + strand, within GFF2884at 310.577 kb on - strand, within GFF2884at 310.577 kb on - strand, within GFF2884at 310.577 kb on - strand, within GFF2884at 311.038 kb on + strand, within GFF2884at 311.038 kb on + strand, within GFF2884at 311.039 kb on - strand, within GFF2884at 311.273 kb on + strandat 311.274 kb on - strandat 311.287 kb on + strandat 311.287 kb on + strandat 311.287 kb on + strandat 311.288 kb on - strandat 311.288 kb on - strandat 311.288 kb on - strandat 311.313 kb on + strandat 311.612 kb on + strand, within GFF2885at 311.613 kb on - strand, within GFF2885at 311.613 kb on - strand, within GFF2885at 311.722 kb on + strand, within GFF2885at 311.723 kb on - strand, within GFF2885at 311.843 kb on + strand, within GFF2885at 311.843 kb on + strand, within GFF2885at 311.843 kb on + strand, within GFF2885at 311.844 kb on - strand, within GFF2885at 311.844 kb on - strand, within GFF2885at 312.119 kb on + strand, within GFF2885at 312.119 kb on + strand, within GFF2885

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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309,335 + GFF2883 0.19 -3.0
309,335 + GFF2883 0.19 +0.3
309,335 + GFF2883 0.19 +1.1
309,335 + GFF2883 0.19 -0.2
309,587 - GFF2883 0.40 +0.3
309,587 - GFF2883 0.40 +1.8
309,602 + GFF2883 0.42 -0.5
309,602 + GFF2883 0.42 -3.3
309,603 - GFF2883 0.42 +4.8
309,603 - GFF2883 0.42 -2.0
309,603 - GFF2883 0.42 -0.3
309,603 - GFF2883 0.42 +0.1
309,603 - GFF2883 0.42 -0.2
309,603 - GFF2883 0.42 -0.8
309,662 + GFF2883 0.47 -1.2
309,662 + GFF2883 0.47 +1.7
309,663 - GFF2883 0.47 +0.3
309,663 - GFF2883 0.47 -1.2
309,852 - GFF2883 0.62 -2.3
309,852 - GFF2883 0.62 +0.5
309,852 - GFF2883 0.62 -3.2
309,852 - GFF2883 0.62 -1.4
309,852 - GFF2883 0.62 -0.5
309,852 - GFF2883 0.62 -1.4
309,852 - GFF2883 0.62 -2.0
309,852 - GFF2883 0.62 +2.6
309,938 + GFF2883 0.69 +1.1
309,938 + GFF2883 0.69 +0.1
309,938 + GFF2883 0.69 +0.5
309,938 + GFF2883 0.69 -0.0
309,938 + GFF2883 0.69 -1.0
309,938 + GFF2883 0.69 -2.1
309,938 + GFF2883 0.69 +0.5
309,939 - GFF2883 0.70 +0.8
309,939 - GFF2883 0.70 +1.8
309,939 - GFF2883 0.70 +0.3
309,939 - GFF2883 0.70 +0.7
309,939 - GFF2883 0.70 +0.8
309,939 - GFF2883 0.70 +0.8
309,939 - GFF2883 0.70 -0.4
309,939 - GFF2883 0.70 -1.3
309,939 - GFF2883 0.70 -0.7
309,939 - GFF2883 0.70 +0.7
309,986 + GFF2883 0.73 -1.3
309,986 + GFF2883 0.73 -1.9
309,986 + GFF2883 0.73 -2.1
309,986 + GFF2883 0.73 -1.7
309,986 + GFF2883 0.73 -0.2
309,986 + GFF2883 0.73 -0.5
309,987 - GFF2883 0.74 -1.2
309,987 - GFF2883 0.74 -0.5
309,987 - GFF2883 0.74 +1.3
309,987 - GFF2883 0.74 -1.9
309,987 - GFF2883 0.74 -0.4
309,987 - GFF2883 0.74 +1.1
309,989 + GFF2883 0.74 -2.7
310,299 + -1.2
310,299 + -1.2
310,300 - +0.8
310,300 - +2.0
310,300 - -1.9
310,300 - +0.7
310,300 - -0.0
310,560 + GFF2884 0.27 -1.0
310,560 + GFF2884 0.27 +2.3
310,560 + GFF2884 0.27 -1.3
310,560 + GFF2884 0.27 -1.5
310,561 - GFF2884 0.27 -2.4
310,561 - GFF2884 0.27 +0.4
310,561 - GFF2884 0.27 -1.0
310,561 - GFF2884 0.27 -2.0
310,561 - GFF2884 0.27 -0.7
310,561 - GFF2884 0.27 -2.2
310,561 - GFF2884 0.27 +0.8
310,561 - GFF2884 0.27 -1.5
310,576 + GFF2884 0.29 +2.4
310,576 + GFF2884 0.29 +0.3
310,577 - GFF2884 0.29 -0.1
310,577 - GFF2884 0.29 -0.6
310,577 - GFF2884 0.29 -1.3
311,038 + GFF2884 0.78 -0.5
311,038 + GFF2884 0.78 +0.4
311,039 - GFF2884 0.78 -1.7
311,273 + +0.8
311,274 - -0.6
311,287 + -2.6
311,287 + -0.5
311,287 + +1.1
311,288 - -1.3
311,288 - +1.0
311,288 - -0.3
311,313 + -0.7
311,612 + GFF2885 0.29 -2.6
311,613 - GFF2885 0.29 +2.1
311,613 - GFF2885 0.29 -3.7
311,722 + GFF2885 0.41 -3.7
311,723 - GFF2885 0.41 +1.7
311,843 + GFF2885 0.54 -3.2
311,843 + GFF2885 0.54 +2.3
311,843 + GFF2885 0.54 +0.3
311,844 - GFF2885 0.55 -2.7
311,844 - GFF2885 0.55 -0.2
312,119 + GFF2885 0.85 -0.5
312,119 + GFF2885 0.85 -1.6

Or see this region's nucleotide sequence