Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2807 and GFF2808 are separated by 6 nucleotides GFF2808 and GFF2809 are separated by 13 nucleotides GFF2809 and GFF2810 overlap by 4 nucleotides GFF2810 and GFF2811 overlap by 1 nucleotides GFF2811 and GFF2812 are separated by 15 nucleotides
GFF2807 - Glyoxalase family protein, at 237,215 to 237,586
GFF2807
GFF2808 - hypothetical protein, at 237,593 to 238,042
GFF2808
GFF2809 - Putative transcription regulator, at 238,056 to 238,505
GFF2809
GFF2810 - hypothetical protein, at 238,502 to 238,975
GFF2810
GFF2811 - Transcriptional regulator, YafY family, at 238,975 to 239,685
GFF2811
GFF2812 - Replicative DNA helicase (DnaB) (EC 3.6.4.12), at 239,701 to 241,107
GFF2812
Position (kb) 238
239 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 237.734 kb on + strand, within GFF2808 at 237.734 kb on + strand, within GFF2808 at 237.734 kb on + strand, within GFF2808 at 237.734 kb on + strand, within GFF2808 at 237.734 kb on + strand, within GFF2808 at 237.734 kb on + strand, within GFF2808 at 237.734 kb on + strand, within GFF2808 at 237.734 kb on + strand, within GFF2808 at 237.735 kb on - strand, within GFF2808 at 237.735 kb on - strand, within GFF2808 at 237.735 kb on - strand, within GFF2808 at 237.737 kb on + strand, within GFF2808 at 237.737 kb on + strand, within GFF2808 at 237.738 kb on - strand, within GFF2808 at 237.738 kb on - strand, within GFF2808 at 237.738 kb on - strand, within GFF2808 at 237.738 kb on - strand, within GFF2808 at 237.738 kb on - strand, within GFF2808 at 237.738 kb on - strand, within GFF2808 at 237.738 kb on - strand, within GFF2808 at 237.818 kb on + strand, within GFF2808 at 237.819 kb on - strand, within GFF2808 at 237.819 kb on - strand, within GFF2808 at 237.869 kb on + strand, within GFF2808 at 237.870 kb on - strand, within GFF2808 at 237.947 kb on + strand, within GFF2808 at 237.947 kb on + strand, within GFF2808 at 237.947 kb on + strand, within GFF2808 at 237.947 kb on + strand, within GFF2808 at 237.948 kb on - strand, within GFF2808 at 237.948 kb on - strand, within GFF2808 at 237.948 kb on - strand, within GFF2808 at 237.948 kb on - strand, within GFF2808 at 237.948 kb on - strand, within GFF2808 at 238.032 kb on + strand at 238.032 kb on + strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.054 kb on - strand at 238.054 kb on - strand at 238.054 kb on - strand at 238.054 kb on - strand at 238.192 kb on - strand, within GFF2809 at 238.192 kb on - strand, within GFF2809 at 238.192 kb on - strand, within GFF2809 at 238.192 kb on - strand, within GFF2809 at 238.239 kb on + strand, within GFF2809 at 238.239 kb on + strand, within GFF2809 at 238.248 kb on + strand, within GFF2809 at 238.249 kb on - strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.407 kb on + strand, within GFF2809 at 238.408 kb on - strand, within GFF2809 at 238.408 kb on - strand, within GFF2809 at 238.440 kb on + strand, within GFF2809 at 238.441 kb on - strand, within GFF2809 at 238.461 kb on + strand at 238.461 kb on + strand at 238.461 kb on + strand at 238.461 kb on + strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.480 kb on + strand at 238.480 kb on + strand at 238.480 kb on + strand at 238.480 kb on + strand at 238.481 kb on - strand at 238.481 kb on - strand at 238.541 kb on + strand at 238.541 kb on + strand at 238.541 kb on + strand at 238.541 kb on + strand at 238.542 kb on - strand at 238.542 kb on - strand at 238.542 kb on - strand at 238.542 kb on - strand at 238.542 kb on - strand at 238.542 kb on - strand at 238.789 kb on + strand, within GFF2810 at 238.789 kb on + strand, within GFF2810 at 238.790 kb on - strand, within GFF2810 at 238.857 kb on - strand, within GFF2810 at 238.931 kb on + strand at 238.932 kb on - strand at 238.932 kb on - strand at 238.932 kb on - strand at 238.932 kb on - strand at 238.932 kb on - strand at 239.083 kb on + strand, within GFF2811 at 239.084 kb on - strand, within GFF2811 at 239.084 kb on - strand, within GFF2811 at 239.341 kb on + strand, within GFF2811 at 239.341 kb on + strand, within GFF2811 at 239.341 kb on + strand, within GFF2811 at 239.341 kb on + strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.434 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.492 kb on - strand, within GFF2811 at 239.492 kb on - strand, within GFF2811 at 239.642 kb on - strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.706 kb on - strand at 239.706 kb on - strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.724 kb on - strand at 239.724 kb on - strand at 239.724 kb on - strand at 239.724 kb on - strand at 239.724 kb on - strand at 239.724 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 237,734 + GFF2808 0.31 -0.0 237,734 + GFF2808 0.31 -0.9 237,734 + GFF2808 0.31 -1.9 237,734 + GFF2808 0.31 +0.8 237,734 + GFF2808 0.31 -0.2 237,734 + GFF2808 0.31 +2.4 237,734 + GFF2808 0.31 -1.2 237,734 + GFF2808 0.31 -1.8 237,735 - GFF2808 0.32 -1.2 237,735 - GFF2808 0.32 -1.5 237,735 - GFF2808 0.32 +0.2 237,737 + GFF2808 0.32 -1.8 237,737 + GFF2808 0.32 +1.1 237,738 - GFF2808 0.32 -2.1 237,738 - GFF2808 0.32 +2.3 237,738 - GFF2808 0.32 -1.6 237,738 - GFF2808 0.32 -0.1 237,738 - GFF2808 0.32 -0.8 237,738 - GFF2808 0.32 -1.8 237,738 - GFF2808 0.32 +1.2 237,818 + GFF2808 0.50 -2.8 237,819 - GFF2808 0.50 -1.8 237,819 - GFF2808 0.50 +3.5 237,869 + GFF2808 0.61 -0.0 237,870 - GFF2808 0.62 -1.5 237,947 + GFF2808 0.79 -0.5 237,947 + GFF2808 0.79 -0.2 237,947 + GFF2808 0.79 +1.0 237,947 + GFF2808 0.79 +0.4 237,948 - GFF2808 0.79 -2.4 237,948 - GFF2808 0.79 +0.8 237,948 - GFF2808 0.79 +1.7 237,948 - GFF2808 0.79 -0.2 237,948 - GFF2808 0.79 -0.2 238,032 + +0.2 238,032 + +1.1 238,033 - -3.1 238,033 - +0.8 238,033 - -1.0 238,033 - -0.9 238,033 - +0.2 238,033 - +0.8 238,033 - -2.1 238,033 - +1.8 238,033 - +0.5 238,053 + -0.0 238,053 + +2.0 238,053 + +1.5 238,053 + +0.5 238,053 + -1.8 238,053 + -0.5 238,053 + +1.8 238,053 + -1.8 238,053 + -1.7 238,053 + -0.2 238,053 + +0.2 238,053 + -1.4 238,054 - -1.3 238,054 - -2.6 238,054 - +1.1 238,054 - -2.6 238,192 - GFF2809 0.30 -1.9 238,192 - GFF2809 0.30 -0.5 238,192 - GFF2809 0.30 +1.1 238,192 - GFF2809 0.30 -1.3 238,239 + GFF2809 0.41 -1.4 238,239 + GFF2809 0.41 -1.3 238,248 + GFF2809 0.43 -1.8 238,249 - GFF2809 0.43 -0.5 238,338 + GFF2809 0.63 -1.0 238,338 + GFF2809 0.63 +2.2 238,338 + GFF2809 0.63 -2.1 238,338 + GFF2809 0.63 -2.3 238,338 + GFF2809 0.63 -0.6 238,338 + GFF2809 0.63 -1.5 238,338 + GFF2809 0.63 -1.8 238,338 + GFF2809 0.63 +0.6 238,339 - GFF2809 0.63 +0.2 238,339 - GFF2809 0.63 +0.4 238,339 - GFF2809 0.63 -1.2 238,339 - GFF2809 0.63 +1.6 238,339 - GFF2809 0.63 +2.3 238,339 - GFF2809 0.63 -1.2 238,339 - GFF2809 0.63 +0.8 238,407 + GFF2809 0.78 +1.8 238,408 - GFF2809 0.78 +1.0 238,408 - GFF2809 0.78 +1.4 238,440 + GFF2809 0.85 +0.4 238,441 - GFF2809 0.86 -1.0 238,461 + +0.2 238,461 + -0.8 238,461 + -1.3 238,461 + -0.4 238,462 - -1.0 238,462 - -2.3 238,462 - -0.2 238,462 - -1.6 238,462 - -2.5 238,462 - -1.3 238,462 - -0.5 238,462 - +1.1 238,480 + -3.1 238,480 + +0.2 238,480 + -2.8 238,480 + +0.2 238,481 - -0.2 238,481 - +0.2 238,541 + -0.5 238,541 + +0.0 238,541 + -1.4 238,541 + +1.5 238,542 - +0.4 238,542 - -1.3 238,542 - -0.3 238,542 - -4.1 238,542 - -2.6 238,542 - -2.4 238,789 + GFF2810 0.61 -0.0 238,789 + GFF2810 0.61 -3.1 238,790 - GFF2810 0.61 -0.5 238,857 - GFF2810 0.75 -1.0 238,931 + -0.4 238,932 - +1.9 238,932 - +1.8 238,932 - -0.2 238,932 - +1.0 238,932 - +1.5 239,083 + GFF2811 0.15 -0.8 239,084 - GFF2811 0.15 +0.3 239,084 - GFF2811 0.15 -0.5 239,341 + GFF2811 0.51 -0.5 239,341 + GFF2811 0.51 -0.2 239,341 + GFF2811 0.51 -2.7 239,341 + GFF2811 0.51 +0.1 239,342 - GFF2811 0.52 -0.4 239,342 - GFF2811 0.52 +1.5 239,342 - GFF2811 0.52 +2.2 239,342 - GFF2811 0.52 -0.9 239,342 - GFF2811 0.52 -3.1 239,342 - GFF2811 0.52 -0.1 239,342 - GFF2811 0.52 -1.1 239,342 - GFF2811 0.52 -0.3 239,434 + GFF2811 0.65 +1.0 239,491 + GFF2811 0.73 +0.2 239,491 + GFF2811 0.73 -1.2 239,491 + GFF2811 0.73 -0.4 239,491 + GFF2811 0.73 +1.8 239,491 + GFF2811 0.73 -1.8 239,492 - GFF2811 0.73 -2.3 239,492 - GFF2811 0.73 -3.8 239,642 - -0.5 239,683 + -0.2 239,683 + -0.5 239,683 + -1.0 239,683 + -0.3 239,683 + +3.1 239,683 + +0.1 239,683 + -1.0 239,683 + +0.3 239,683 + -2.1 239,683 + -0.7 239,684 - -0.5 239,684 - -2.3 239,684 - -2.0 239,684 - +1.2 239,684 - -2.7 239,684 - -2.9 239,684 - -0.5 239,684 - -1.4 239,684 - +0.8 239,684 - +1.1 239,684 - -0.3 239,706 - +1.3 239,706 - -2.8 239,723 + +0.7 239,723 + -1.6 239,723 + -0.1 239,723 + +1.1 239,723 + -0.5 239,723 + -1.6 239,723 + -2.6 239,723 + +1.5 239,723 + +0.2 239,724 - +0.2 239,724 - +2.7 239,724 - -1.1 239,724 - -1.1 239,724 - -1.9 239,724 - -1.2
Or see this region's nucleotide sequence