Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2802 and GFF2803 overlap by 4 nucleotides GFF2803 and GFF2804 are separated by 176 nucleotides GFF2804 and GFF2805 are separated by 145 nucleotides
GFF2802 - DUF1176 domain-containing protein, at 231,602 to 232,636
GFF2802
GFF2803 - Alanine transaminase (EC 2.6.1.2), at 232,633 to 233,865
GFF2803
GFF2804 - Membrane protein, at 234,042 to 234,425
GFF2804
GFF2805 - Thiol peroxidase, Bcp-type (EC 1.11.1.15), at 234,571 to 235,047
GFF2805
Position (kb) 232
233
234 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 231.654 kb on + strand at 231.655 kb on - strand at 231.655 kb on - strand at 231.856 kb on - strand, within GFF2802 at 231.856 kb on - strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.894 kb on + strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.895 kb on - strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.900 kb on + strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 231.901 kb on - strand, within GFF2802 at 232.459 kb on + strand, within GFF2802 at 232.459 kb on + strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.460 kb on - strand, within GFF2802 at 232.838 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.868 kb on + strand, within GFF2803 at 232.869 kb on - strand, within GFF2803 at 232.869 kb on - strand, within GFF2803 at 232.869 kb on - strand, within GFF2803 at 232.869 kb on - strand, within GFF2803 at 232.926 kb on - strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.075 kb on + strand, within GFF2803 at 233.076 kb on - strand, within GFF2803 at 233.076 kb on - strand, within GFF2803 at 233.142 kb on - strand, within GFF2803 at 233.142 kb on - strand, within GFF2803 at 233.142 kb on - strand, within GFF2803 at 233.222 kb on + strand, within GFF2803 at 233.223 kb on - strand, within GFF2803 at 233.237 kb on + strand, within GFF2803 at 233.237 kb on + strand, within GFF2803 at 233.313 kb on - strand, within GFF2803 at 233.313 kb on - strand, within GFF2803 at 233.430 kb on - strand, within GFF2803 at 233.430 kb on - strand, within GFF2803 at 233.430 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.571 kb on - strand, within GFF2803 at 233.823 kb on - strand at 233.823 kb on - strand at 233.823 kb on - strand at 233.823 kb on - strand at 233.823 kb on - strand at 233.823 kb on - strand at 233.919 kb on + strand at 233.920 kb on - strand at 233.920 kb on - strand at 233.920 kb on - strand at 233.920 kb on - strand at 233.920 kb on - strand at 234.013 kb on - strand at 234.015 kb on - strand at 234.354 kb on + strand, within GFF2804 at 234.354 kb on + strand, within GFF2804 at 234.354 kb on + strand, within GFF2804 at 234.354 kb on + strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.355 kb on - strand, within GFF2804 at 234.426 kb on + strand at 234.426 kb on + strand at 234.426 kb on + strand at 234.426 kb on + strand at 234.426 kb on + strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.427 kb on - strand at 234.443 kb on + strand at 234.448 kb on + strand at 234.448 kb on + strand at 234.448 kb on + strand at 234.448 kb on + strand at 234.448 kb on + strand at 234.449 kb on - strand at 234.449 kb on - strand at 234.449 kb on - strand at 234.451 kb on + strand at 234.451 kb on + strand at 234.452 kb on - strand at 234.482 kb on + strand at 234.482 kb on + strand at 234.482 kb on + strand at 234.482 kb on + strand at 234.483 kb on - strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.551 kb on + strand at 234.552 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 231,654 + +0.2 231,655 - -1.0 231,655 - +0.7 231,856 - GFF2802 0.25 +1.1 231,856 - GFF2802 0.25 -0.8 231,894 + GFF2802 0.28 +1.8 231,894 + GFF2802 0.28 -0.5 231,894 + GFF2802 0.28 +0.8 231,894 + GFF2802 0.28 +0.2 231,894 + GFF2802 0.28 +1.3 231,894 + GFF2802 0.28 -3.2 231,894 + GFF2802 0.28 +0.8 231,894 + GFF2802 0.28 +0.0 231,894 + GFF2802 0.28 +1.4 231,895 - GFF2802 0.28 -1.2 231,895 - GFF2802 0.28 -1.4 231,895 - GFF2802 0.28 +1.5 231,895 - GFF2802 0.28 -2.4 231,895 - GFF2802 0.28 -1.8 231,895 - GFF2802 0.28 -2.2 231,895 - GFF2802 0.28 -0.5 231,895 - GFF2802 0.28 -1.6 231,895 - GFF2802 0.28 -3.1 231,895 - GFF2802 0.28 -0.8 231,895 - GFF2802 0.28 -0.0 231,900 + GFF2802 0.29 -1.2 231,900 + GFF2802 0.29 +1.2 231,900 + GFF2802 0.29 +0.8 231,900 + GFF2802 0.29 -0.3 231,901 - GFF2802 0.29 -1.1 231,901 - GFF2802 0.29 -2.9 231,901 - GFF2802 0.29 +0.7 231,901 - GFF2802 0.29 -0.2 231,901 - GFF2802 0.29 +1.3 231,901 - GFF2802 0.29 -0.4 231,901 - GFF2802 0.29 -0.7 231,901 - GFF2802 0.29 +2.7 231,901 - GFF2802 0.29 -0.5 232,459 + GFF2802 0.83 +2.2 232,459 + GFF2802 0.83 -0.2 232,460 - GFF2802 0.83 -1.3 232,460 - GFF2802 0.83 +0.9 232,460 - GFF2802 0.83 -2.3 232,460 - GFF2802 0.83 -2.3 232,460 - GFF2802 0.83 +2.3 232,460 - GFF2802 0.83 +0.7 232,460 - GFF2802 0.83 +0.5 232,838 + GFF2803 0.17 -0.8 232,868 + GFF2803 0.19 -0.2 232,868 + GFF2803 0.19 -2.3 232,868 + GFF2803 0.19 -2.0 232,868 + GFF2803 0.19 -1.8 232,868 + GFF2803 0.19 +0.8 232,868 + GFF2803 0.19 +1.0 232,868 + GFF2803 0.19 -1.3 232,869 - GFF2803 0.19 -2.1 232,869 - GFF2803 0.19 -1.3 232,869 - GFF2803 0.19 -1.6 232,869 - GFF2803 0.19 +2.3 232,926 - GFF2803 0.24 -2.3 233,075 + GFF2803 0.36 -1.0 233,075 + GFF2803 0.36 -1.0 233,075 + GFF2803 0.36 -1.5 233,075 + GFF2803 0.36 -2.6 233,075 + GFF2803 0.36 -1.0 233,076 - GFF2803 0.36 +1.8 233,076 - GFF2803 0.36 -0.0 233,142 - GFF2803 0.41 +2.2 233,142 - GFF2803 0.41 -0.2 233,142 - GFF2803 0.41 -1.9 233,222 + GFF2803 0.48 -1.2 233,223 - GFF2803 0.48 +1.5 233,237 + GFF2803 0.49 +0.2 233,237 + GFF2803 0.49 +0.2 233,313 - GFF2803 0.55 +0.6 233,313 - GFF2803 0.55 -1.5 233,430 - GFF2803 0.65 -0.8 233,430 - GFF2803 0.65 -0.2 233,430 - GFF2803 0.65 -0.5 233,571 - GFF2803 0.76 +2.3 233,571 - GFF2803 0.76 -2.0 233,571 - GFF2803 0.76 -0.2 233,571 - GFF2803 0.76 +0.8 233,571 - GFF2803 0.76 -3.5 233,571 - GFF2803 0.76 -0.8 233,823 - -1.6 233,823 - -1.0 233,823 - -0.2 233,823 - -1.4 233,823 - -0.2 233,823 - -0.2 233,919 + +0.2 233,920 - -0.6 233,920 - +0.5 233,920 - +1.2 233,920 - -0.0 233,920 - +0.3 234,013 - +1.9 234,015 - -0.7 234,354 + GFF2804 0.81 -2.1 234,354 + GFF2804 0.81 -2.1 234,354 + GFF2804 0.81 -1.0 234,354 + GFF2804 0.81 -1.2 234,355 - GFF2804 0.82 -0.8 234,355 - GFF2804 0.82 -2.0 234,355 - GFF2804 0.82 +0.8 234,355 - GFF2804 0.82 -1.0 234,355 - GFF2804 0.82 +0.8 234,355 - GFF2804 0.82 -0.5 234,426 + -0.4 234,426 + -0.5 234,426 + -0.4 234,426 + -0.2 234,426 + -2.0 234,427 - -1.9 234,427 - -0.4 234,427 - -2.2 234,427 - +0.2 234,427 - -2.9 234,427 - -0.6 234,443 + -3.9 234,448 + -3.6 234,448 + -0.8 234,448 + -1.0 234,448 + -1.9 234,448 + +0.8 234,449 - -0.8 234,449 - -1.5 234,449 - +0.8 234,451 + +1.5 234,451 + -3.6 234,452 - -0.8 234,482 + -0.9 234,482 + -3.3 234,482 + +1.1 234,482 + +1.8 234,483 - -0.2 234,551 + -2.9 234,551 + -0.2 234,551 + -0.4 234,551 + -2.3 234,551 + +0.8 234,551 + +0.2 234,551 + -2.3 234,551 + -0.3 234,552 - +0.8
Or see this region's nucleotide sequence