Strain Fitness in Variovorax sp. SCN45 around GFF2788

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2786 and GFF2787 are separated by 14 nucleotidesGFF2787 and GFF2788 are separated by 9 nucleotidesGFF2788 and GFF2789 are separated by 92 nucleotidesGFF2789 and GFF2790 are separated by 5 nucleotides GFF2786 - Sulfate transporter family protein, at 215,984 to 217,711 GFF2786 GFF2787 - Transcriptional regulator PA1859, LysR family, at 217,726 to 218,610 GFF2787 GFF2788 - FIG003461: hypothetical protein, at 218,620 to 219,201 GFF2788 GFF2789 - Peptidyl-tRNA hydrolase ArfB (EC 3.1.1.29), at 219,294 to 219,701 GFF2789 GFF2790 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 219,707 to 220,891 GFF2790 Position (kb) 218 219 220Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 217.625 kb on + strandat 218.080 kb on + strand, within GFF2787at 218.081 kb on - strand, within GFF2787at 218.516 kb on + strand, within GFF2787at 218.516 kb on + strand, within GFF2787at 218.516 kb on + strand, within GFF2787at 218.516 kb on + strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.539 kb on + strandat 218.539 kb on + strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.542 kb on + strandat 218.542 kb on + strandat 218.542 kb on + strandat 218.543 kb on - strandat 218.543 kb on - strandat 218.702 kb on + strand, within GFF2788at 218.702 kb on + strand, within GFF2788at 218.702 kb on + strand, within GFF2788at 218.703 kb on - strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.732 kb on + strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.733 kb on - strand, within GFF2788at 218.734 kb on + strand, within GFF2788at 218.734 kb on + strand, within GFF2788at 218.734 kb on + strand, within GFF2788at 218.734 kb on + strand, within GFF2788at 218.735 kb on - strand, within GFF2788at 218.735 kb on - strand, within GFF2788at 218.735 kb on - strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.834 kb on + strand, within GFF2788at 218.835 kb on - strand, within GFF2788at 218.835 kb on - strand, within GFF2788at 218.835 kb on - strand, within GFF2788at 218.835 kb on - strand, within GFF2788at 219.373 kb on + strand, within GFF2789at 219.374 kb on - strand, within GFF2789at 219.374 kb on - strand, within GFF2789at 219.586 kb on + strand, within GFF2789at 219.597 kb on + strand, within GFF2789at 219.597 kb on + strand, within GFF2789at 219.597 kb on + strand, within GFF2789at 219.597 kb on + strand, within GFF2789at 219.598 kb on - strand, within GFF2789at 219.598 kb on - strand, within GFF2789at 219.598 kb on - strand, within GFF2789at 219.772 kb on - strandat 219.772 kb on - strandat 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.026 kb on + strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.027 kb on - strand, within GFF2790at 220.053 kb on + strand, within GFF2790at 220.054 kb on - strand, within GFF2790

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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217,625 + +0.3
218,080 + GFF2787 0.40 -0.2
218,081 - GFF2787 0.40 -2.6
218,516 + GFF2787 0.89 -1.2
218,516 + GFF2787 0.89 +0.2
218,516 + GFF2787 0.89 -2.8
218,516 + GFF2787 0.89 +0.9
218,517 - GFF2787 0.89 +1.2
218,517 - GFF2787 0.89 -0.8
218,517 - GFF2787 0.89 -0.6
218,517 - GFF2787 0.89 -1.9
218,517 - GFF2787 0.89 -1.9
218,517 - GFF2787 0.89 -0.5
218,539 + -1.0
218,539 + -1.9
218,540 - -0.3
218,540 - -1.5
218,540 - -3.3
218,540 - +0.0
218,540 - +1.5
218,540 - +0.8
218,540 - -0.5
218,542 + -2.2
218,542 + -3.1
218,542 + +0.1
218,543 - -0.5
218,543 - +0.2
218,702 + GFF2788 0.14 -0.5
218,702 + GFF2788 0.14 +0.3
218,702 + GFF2788 0.14 -3.5
218,703 - GFF2788 0.14 -1.5
218,732 + GFF2788 0.19 +0.9
218,732 + GFF2788 0.19 +1.2
218,732 + GFF2788 0.19 -0.2
218,732 + GFF2788 0.19 +0.2
218,732 + GFF2788 0.19 +0.4
218,732 + GFF2788 0.19 -1.0
218,732 + GFF2788 0.19 -1.3
218,732 + GFF2788 0.19 +0.5
218,732 + GFF2788 0.19 -0.1
218,732 + GFF2788 0.19 -0.1
218,732 + GFF2788 0.19 +0.6
218,733 - GFF2788 0.19 +0.8
218,733 - GFF2788 0.19 -0.5
218,733 - GFF2788 0.19 +0.6
218,733 - GFF2788 0.19 -2.9
218,733 - GFF2788 0.19 -0.5
218,733 - GFF2788 0.19 -2.2
218,733 - GFF2788 0.19 -2.2
218,733 - GFF2788 0.19 -1.8
218,733 - GFF2788 0.19 +0.6
218,733 - GFF2788 0.19 +0.4
218,733 - GFF2788 0.19 +0.2
218,733 - GFF2788 0.19 -1.3
218,733 - GFF2788 0.19 -1.2
218,733 - GFF2788 0.19 -0.2
218,733 - GFF2788 0.19 -1.6
218,733 - GFF2788 0.19 +1.8
218,734 + GFF2788 0.20 -2.8
218,734 + GFF2788 0.20 +2.5
218,734 + GFF2788 0.20 -0.6
218,734 + GFF2788 0.20 +0.2
218,735 - GFF2788 0.20 +1.4
218,735 - GFF2788 0.20 -0.1
218,735 - GFF2788 0.20 +0.7
218,834 + GFF2788 0.37 -2.3
218,834 + GFF2788 0.37 +0.8
218,834 + GFF2788 0.37 -2.5
218,834 + GFF2788 0.37 -1.0
218,834 + GFF2788 0.37 +0.4
218,835 - GFF2788 0.37 -0.5
218,835 - GFF2788 0.37 -3.2
218,835 - GFF2788 0.37 +1.1
218,835 - GFF2788 0.37 +0.2
219,373 + GFF2789 0.19 -0.8
219,374 - GFF2789 0.20 -1.3
219,374 - GFF2789 0.20 +0.3
219,586 + GFF2789 0.72 +1.1
219,597 + GFF2789 0.74 +0.9
219,597 + GFF2789 0.74 +0.2
219,597 + GFF2789 0.74 +0.8
219,597 + GFF2789 0.74 -4.4
219,598 - GFF2789 0.75 +0.1
219,598 - GFF2789 0.75 -0.4
219,598 - GFF2789 0.75 -0.2
219,772 - +1.2
219,772 - +1.2
220,026 + GFF2790 0.27 +0.6
220,026 + GFF2790 0.27 -2.4
220,026 + GFF2790 0.27 -0.0
220,026 + GFF2790 0.27 -0.6
220,026 + GFF2790 0.27 -0.1
220,026 + GFF2790 0.27 +2.6
220,026 + GFF2790 0.27 +0.7
220,026 + GFF2790 0.27 +0.9
220,026 + GFF2790 0.27 +3.2
220,027 - GFF2790 0.27 +0.2
220,027 - GFF2790 0.27 +2.6
220,027 - GFF2790 0.27 +1.8
220,027 - GFF2790 0.27 +0.2
220,027 - GFF2790 0.27 -1.9
220,027 - GFF2790 0.27 -1.7
220,027 - GFF2790 0.27 -0.5
220,027 - GFF2790 0.27 -0.1
220,027 - GFF2790 0.27 +0.8
220,027 - GFF2790 0.27 -2.4
220,027 - GFF2790 0.27 -1.1
220,027 - GFF2790 0.27 +1.0
220,027 - GFF2790 0.27 -1.6
220,027 - GFF2790 0.27 -1.5
220,027 - GFF2790 0.27 -2.4
220,027 - GFF2790 0.27 +0.6
220,053 + GFF2790 0.29 -0.1
220,054 - GFF2790 0.29 +1.1

Or see this region's nucleotide sequence