Strain Fitness in Variovorax sp. SCN45 around GFF2661

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
83,151	+				-2.0
83,152	-				-2.8
83,152	-				-1.8
83,152	-				+0.8
83,152	-				+0.8
83,234	+				+0.9
83,234	+				-1.6
83,234	+				-3.5
83,236	+				+0.2
83,236	+				-0.8
83,236	+				+0.3
83,237	-				-1.2
83,237	-				-1.6
83,237	-				+0.6
83,237	-				-0.8
83,310	+				+1.2
83,310	+				+0.9
83,310	+				-3.2
83,311	-				+0.8
83,311	-				+0.3
83,311	-				+0.8
83,538	-		GFF2661	0.24	-1.3
83,667	-		GFF2661	0.34	-0.5
83,769	-		GFF2661	0.42	+2.2
83,769	-		GFF2661	0.42	+0.2
83,769	-		GFF2661	0.42	-0.5
83,974	-		GFF2661	0.58	+0.6
84,554	+				+0.9
84,554	+				-0.3
84,554	+				-2.6
84,555	-				-1.0
84,615	-				-1.3
84,845	+		GFF2662	0.31	-0.5
84,899	+		GFF2662	0.36	-0.7
84,899	+		GFF2662	0.36	+0.3
84,900	-		GFF2662	0.36	+1.8
84,905	+		GFF2662	0.37	+1.8
84,905	+		GFF2662	0.37	+0.3
84,906	-		GFF2662	0.37	+0.2
84,906	-		GFF2662	0.37	+0.2
84,906	-		GFF2662	0.37	-0.5
84,906	-		GFF2662	0.37	+0.7
84,906	-		GFF2662	0.37	-3.0
85,490	+				+0.3
85,490	+				+0.4
85,491	-				+0.3
85,491	-				+0.0
85,491	-				-1.3
85,491	-				-0.5
85,491	-				-1.8