Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
GFF2613 - no description, at 18,766 to 18,894
GFF2613
Position (kb) 18
19 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 17.800 kb on - strand at 17.853 kb on + strand at 17.998 kb on + strand at 17.999 kb on - strand at 18.026 kb on - strand at 18.026 kb on - strand at 18.070 kb on + strand at 18.144 kb on + strand at 18.144 kb on + strand at 18.145 kb on - strand at 18.185 kb on + strand at 18.186 kb on - strand at 18.186 kb on - strand at 18.186 kb on - strand at 18.231 kb on + strand at 18.231 kb on + strand at 18.232 kb on - strand at 18.232 kb on - strand at 18.249 kb on - strand at 18.266 kb on + strand at 18.267 kb on - strand at 18.267 kb on - strand at 18.312 kb on - strand at 18.445 kb on + strand at 18.445 kb on + strand at 18.544 kb on - strand at 18.565 kb on - strand at 18.565 kb on - strand at 18.568 kb on + strand at 18.591 kb on + strand at 18.591 kb on + strand at 18.591 kb on + strand at 18.591 kb on + strand at 18.592 kb on - strand at 18.592 kb on - strand at 18.664 kb on + strand at 18.665 kb on - strand at 18.696 kb on + strand at 18.696 kb on + strand at 18.697 kb on - strand at 18.697 kb on - strand at 18.719 kb on - strand at 18.760 kb on + strand at 18.760 kb on + strand at 18.760 kb on + strand at 18.760 kb on + strand at 18.760 kb on + strand at 18.761 kb on - strand at 18.761 kb on - strand at 18.767 kb on + strand at 18.767 kb on + strand at 18.767 kb on + strand at 18.767 kb on + strand at 18.769 kb on + strand at 18.769 kb on + strand at 18.861 kb on - strand, within GFF2613 at 18.869 kb on + strand, within GFF2613 at 18.870 kb on - strand, within GFF2613 at 18.870 kb on - strand, within GFF2613 at 18.896 kb on + strand at 18.915 kb on - strand at 18.960 kb on - strand at 18.960 kb on - strand at 18.960 kb on - strand at 18.960 kb on - strand at 19.016 kb on + strand at 19.016 kb on + strand at 19.016 kb on + strand at 19.017 kb on - strand at 19.017 kb on - strand at 19.044 kb on - strand at 19.058 kb on - strand at 19.063 kb on + strand at 19.105 kb on + strand at 19.105 kb on + strand at 19.105 kb on + strand at 19.106 kb on - strand at 19.106 kb on - strand at 19.106 kb on - strand at 19.112 kb on + strand at 19.112 kb on + strand at 19.113 kb on - strand at 19.113 kb on - strand at 19.113 kb on - strand at 19.113 kb on - strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.312 kb on + strand at 19.359 kb on - strand at 19.393 kb on + strand at 19.393 kb on + strand at 19.393 kb on + strand at 19.393 kb on + strand at 19.394 kb on - strand at 19.394 kb on - strand at 19.394 kb on - strand at 19.394 kb on - strand at 19.422 kb on + strand at 19.422 kb on + strand at 19.422 kb on + strand at 19.423 kb on - strand at 19.423 kb on - strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.462 kb on + strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.464 kb on + strand at 19.464 kb on + strand at 19.464 kb on + strand at 19.464 kb on + strand at 19.465 kb on - strand at 19.465 kb on - strand at 19.465 kb on - strand at 19.465 kb on - strand at 19.485 kb on + strand at 19.485 kb on + strand at 19.486 kb on - strand at 19.505 kb on + strand at 19.505 kb on + strand at 19.506 kb on - strand at 19.506 kb on - strand at 19.506 kb on - strand at 19.506 kb on - strand at 19.509 kb on + strand at 19.509 kb on + strand at 19.510 kb on - strand at 19.510 kb on - strand at 19.614 kb on - strand at 19.614 kb on - strand at 19.614 kb on - strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.622 kb on + strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.623 kb on - strand at 19.625 kb on + strand at 19.625 kb on + strand at 19.626 kb on - strand at 19.626 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.641 kb on - strand at 19.668 kb on - strand at 19.668 kb on - strand at 19.668 kb on - strand at 19.668 kb on - strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.754 kb on + strand at 19.798 kb on + strand at 19.798 kb on + strand at 19.798 kb on + strand at 19.799 kb on - strand at 19.805 kb on + strand at 19.805 kb on + strand at 19.806 kb on - strand at 19.806 kb on - strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.825 kb on + strand at 19.826 kb on - strand at 19.826 kb on - strand at 19.826 kb on - strand at 19.884 kb on + strand at 19.885 kb on - strand at 19.885 kb on - strand at 19.885 kb on - strand at 19.885 kb on - strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.891 kb on + strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand at 19.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 17,800 - -1.5 17,853 + -0.5 17,998 + -1.3 17,999 - -0.2 18,026 - -0.1 18,026 - -1.6 18,070 + -0.4 18,144 + +3.0 18,144 + -1.6 18,145 - -1.6 18,185 + -0.8 18,186 - -1.8 18,186 - +0.8 18,186 - +0.0 18,231 + -2.1 18,231 + +2.2 18,232 - +1.1 18,232 - +1.7 18,249 - -1.3 18,266 + +0.9 18,267 - +2.4 18,267 - -0.2 18,312 - +1.1 18,445 + -0.8 18,445 + +2.1 18,544 - -1.7 18,565 - -2.9 18,565 - -2.0 18,568 + +3.5 18,591 + +0.0 18,591 + -0.8 18,591 + -0.0 18,591 + -0.1 18,592 - -1.5 18,592 - +0.8 18,664 + -1.2 18,665 - -0.2 18,696 + +0.0 18,696 + +0.2 18,697 - +2.1 18,697 - +1.1 18,719 - +0.6 18,760 + -2.1 18,760 + -0.2 18,760 + +0.5 18,760 + +1.3 18,760 + +0.7 18,761 - +1.1 18,761 - -1.1 18,767 + +0.6 18,767 + -0.5 18,767 + +1.7 18,767 + +0.5 18,769 + +0.8 18,769 + -0.6 18,861 - GFF2613 0.74 +0.9 18,869 + GFF2613 0.80 -0.2 18,870 - GFF2613 0.81 +0.0 18,870 - GFF2613 0.81 +0.5 18,896 + -1.6 18,915 - -0.8 18,960 - -1.4 18,960 - -0.8 18,960 - -0.3 18,960 - -1.0 19,016 + -0.3 19,016 + -0.4 19,016 + +0.9 19,017 - -3.8 19,017 - -3.3 19,044 - -1.0 19,058 - +0.6 19,063 + -3.5 19,105 + +1.6 19,105 + -0.2 19,105 + -1.8 19,106 - -1.6 19,106 - +0.7 19,106 - -1.0 19,112 + -1.7 19,112 + +1.2 19,113 - +0.7 19,113 - -0.5 19,113 - -1.2 19,113 - +3.2 19,139 + -0.8 19,139 + +1.2 19,312 + +1.0 19,359 - -0.9 19,393 + +1.8 19,393 + -2.0 19,393 + -3.1 19,393 + -1.3 19,394 - +1.8 19,394 - -2.3 19,394 - -0.0 19,394 - -1.2 19,422 + -0.5 19,422 + +0.7 19,422 + -0.8 19,423 - +1.4 19,423 - -0.3 19,462 + +1.5 19,462 + +1.6 19,462 + -3.5 19,462 + -0.1 19,462 + +1.3 19,462 + +0.8 19,463 - -0.8 19,463 - +0.4 19,463 - -0.7 19,463 - +1.0 19,463 - -2.4 19,464 + -1.8 19,464 + -1.6 19,464 + +3.5 19,464 + -4.2 19,465 - +0.8 19,465 - +0.6 19,465 - +1.4 19,465 - -0.5 19,485 + +0.2 19,485 + +1.0 19,486 - -2.3 19,505 + -0.8 19,505 + -1.9 19,506 - -0.8 19,506 - -1.8 19,506 - +0.5 19,506 - +1.1 19,509 + -0.8 19,509 + -0.2 19,510 - +1.1 19,510 - +0.2 19,614 - +0.5 19,614 - +1.6 19,614 - -0.9 19,622 + -0.8 19,622 + +0.8 19,622 + +1.1 19,622 + -1.6 19,622 + -1.5 19,622 + +0.2 19,622 + -2.0 19,622 + +0.2 19,622 + -1.9 19,622 + -0.5 19,622 + +0.8 19,622 + +1.0 19,623 - +0.2 19,623 - +0.1 19,623 - +3.9 19,623 - +0.8 19,623 - +0.8 19,623 - +1.1 19,623 - -1.5 19,623 - -0.4 19,623 - +0.2 19,623 - +1.4 19,623 - -0.1 19,625 + +0.3 19,625 + -0.2 19,626 - -1.8 19,626 - +0.8 19,641 - -2.2 19,641 - -0.1 19,641 - +0.8 19,641 - +0.1 19,641 - -1.6 19,641 - +0.2 19,641 - +1.8 19,668 - +1.6 19,668 - -3.6 19,668 - +0.6 19,668 - +0.8 19,754 + +1.1 19,754 + -1.8 19,754 + -0.8 19,754 + +0.2 19,754 + +1.0 19,754 + -1.1 19,754 + -0.2 19,754 + +0.2 19,754 + -0.8 19,754 + -0.2 19,754 + +2.1 19,754 + -0.7 19,754 + -2.1 19,754 + +1.1 19,754 + -2.2 19,798 + -1.5 19,798 + -1.6 19,798 + +1.3 19,799 - -0.8 19,805 + +0.6 19,805 + +1.2 19,806 - +0.4 19,806 - +0.2 19,825 + -0.8 19,825 + +1.3 19,825 + -0.2 19,825 + -2.9 19,825 + -1.5 19,825 + -0.2 19,825 + -1.5 19,825 + -1.5 19,825 + +0.1 19,825 + +0.8 19,825 + -0.0 19,826 - +1.2 19,826 - +1.3 19,826 - -2.0 19,884 + +1.8 19,885 - -2.3 19,885 - +0.0 19,885 - -2.7 19,885 - +0.1 19,891 + -0.7 19,891 + -2.7 19,891 + +1.1 19,891 + +1.2 19,891 + +2.0 19,891 + -1.0 19,891 + +0.6 19,891 + +2.4 19,891 + -0.4 19,891 + -0.7 19,891 + +1.6 19,891 + -1.0 19,891 + -0.8 19,891 + -0.3 19,891 + -0.8 19,891 + +1.2 19,891 + -1.2 19,892 - +0.7 19,892 - -0.2 19,892 - -1.2 19,892 - +2.4 19,892 - -1.2 19,892 - +0.2 19,892 - +1.2 19,892 - +1.9
Or see this region's nucleotide sequence