Strain Fitness in Variovorax sp. SCN45 around GFF2554

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2552 and GFF2553 are separated by 3 nucleotidesGFF2553 and GFF2554 are separated by 7 nucleotidesGFF2554 and GFF2555 are separated by 4 nucleotidesGFF2555 and GFF2556 are separated by 127 nucleotides GFF2552 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 615,062 to 615,793 GFF2552 GFF2553 - FIG00933538: hypothetical protein, at 615,797 to 616,219 GFF2553 GFF2554 - Integral membrane protein, at 616,227 to 617,108 GFF2554 GFF2555 - FIG00932538: hypothetical protein, at 617,113 to 617,937 GFF2555 GFF2556 - UPF0337 family protein, at 618,065 to 618,262 GFF2556 Position (kb) 616 617 618Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 615.815 kb on + strandat 615.815 kb on + strandat 615.816 kb on - strandat 615.816 kb on - strandat 615.816 kb on - strandat 615.816 kb on - strandat 615.816 kb on - strandat 615.816 kb on - strandat 615.977 kb on + strand, within GFF2553at 615.977 kb on + strand, within GFF2553at 615.978 kb on - strand, within GFF2553at 615.978 kb on - strand, within GFF2553at 616.006 kb on + strand, within GFF2553at 616.006 kb on + strand, within GFF2553at 616.007 kb on - strand, within GFF2553at 616.007 kb on - strand, within GFF2553at 616.028 kb on + strand, within GFF2553at 616.028 kb on + strand, within GFF2553at 616.028 kb on + strand, within GFF2553at 616.028 kb on + strand, within GFF2553at 616.029 kb on - strand, within GFF2553at 616.029 kb on - strand, within GFF2553at 616.029 kb on - strand, within GFF2553at 616.029 kb on - strand, within GFF2553at 616.029 kb on - strand, within GFF2553at 616.115 kb on + strand, within GFF2553at 616.115 kb on + strand, within GFF2553at 616.115 kb on + strand, within GFF2553at 616.116 kb on - strand, within GFF2553at 616.116 kb on - strand, within GFF2553at 616.116 kb on - strand, within GFF2553at 616.116 kb on - strand, within GFF2553at 616.142 kb on + strand, within GFF2553at 616.142 kb on + strand, within GFF2553at 616.143 kb on - strand, within GFF2553at 616.143 kb on - strand, within GFF2553at 616.143 kb on - strand, within GFF2553at 616.455 kb on + strand, within GFF2554at 616.455 kb on + strand, within GFF2554at 616.455 kb on + strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.479 kb on + strand, within GFF2554at 616.506 kb on + strand, within GFF2554at 616.507 kb on - strand, within GFF2554at 616.704 kb on + strand, within GFF2554at 616.704 kb on + strand, within GFF2554at 616.737 kb on + strand, within GFF2554at 616.738 kb on - strand, within GFF2554at 616.738 kb on - strand, within GFF2554at 616.738 kb on - strand, within GFF2554at 616.738 kb on - strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.797 kb on + strand, within GFF2554at 616.797 kb on + strand, within GFF2554at 616.798 kb on - strand, within GFF2554at 616.798 kb on - strand, within GFF2554at 616.890 kb on + strand, within GFF2554at 616.890 kb on + strand, within GFF2554at 616.890 kb on + strand, within GFF2554at 616.890 kb on + strand, within GFF2554at 616.890 kb on + strand, within GFF2554at 616.891 kb on - strand, within GFF2554at 616.926 kb on + strand, within GFF2554at 616.926 kb on + strand, within GFF2554at 616.926 kb on + strand, within GFF2554at 616.926 kb on + strand, within GFF2554at 616.926 kb on + strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 617.368 kb on + strand, within GFF2555at 617.368 kb on + strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.615 kb on - strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.950 kb on + strandat 617.950 kb on + strandat 617.950 kb on + strandat 617.950 kb on + strandat 617.950 kb on + strandat 617.951 kb on - strandat 617.951 kb on - strandat 617.951 kb on - strandat 617.951 kb on - strandat 618.020 kb on - strandat 618.020 kb on - strandat 618.032 kb on + strandat 618.032 kb on + strandat 618.032 kb on + strandat 618.032 kb on + strandat 618.033 kb on - strandat 618.033 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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615,815 + -1.9
615,815 + +1.1
615,816 - +0.3
615,816 - -1.3
615,816 - -1.7
615,816 - -2.1
615,816 - -0.0
615,816 - -2.1
615,977 + GFF2553 0.43 +1.1
615,977 + GFF2553 0.43 +2.4
615,978 - GFF2553 0.43 -0.3
615,978 - GFF2553 0.43 -0.3
616,006 + GFF2553 0.49 +0.1
616,006 + GFF2553 0.49 -0.5
616,007 - GFF2553 0.50 -0.9
616,007 - GFF2553 0.50 -2.7
616,028 + GFF2553 0.55 +0.3
616,028 + GFF2553 0.55 +1.6
616,028 + GFF2553 0.55 +1.8
616,028 + GFF2553 0.55 +1.2
616,029 - GFF2553 0.55 +0.9
616,029 - GFF2553 0.55 -1.3
616,029 - GFF2553 0.55 -1.1
616,029 - GFF2553 0.55 -1.5
616,029 - GFF2553 0.55 +0.8
616,115 + GFF2553 0.75 -0.7
616,115 + GFF2553 0.75 -0.4
616,115 + GFF2553 0.75 -1.1
616,116 - GFF2553 0.75 +1.2
616,116 - GFF2553 0.75 -1.3
616,116 - GFF2553 0.75 +1.9
616,116 - GFF2553 0.75 +0.7
616,142 + GFF2553 0.82 +1.3
616,142 + GFF2553 0.82 -1.3
616,143 - GFF2553 0.82 -1.3
616,143 - GFF2553 0.82 -0.5
616,143 - GFF2553 0.82 -2.9
616,455 + GFF2554 0.26 -3.3
616,455 + GFF2554 0.26 +0.6
616,455 + GFF2554 0.26 -0.9
616,456 - GFF2554 0.26 -1.1
616,456 - GFF2554 0.26 -1.1
616,456 - GFF2554 0.26 -2.8
616,456 - GFF2554 0.26 +0.5
616,456 - GFF2554 0.26 -1.6
616,456 - GFF2554 0.26 -2.3
616,456 - GFF2554 0.26 -0.3
616,479 + GFF2554 0.29 +0.5
616,506 + GFF2554 0.32 -0.7
616,507 - GFF2554 0.32 -0.6
616,704 + GFF2554 0.54 +2.4
616,704 + GFF2554 0.54 -0.0
616,737 + GFF2554 0.58 +1.1
616,738 - GFF2554 0.58 +0.2
616,738 - GFF2554 0.58 -2.5
616,738 - GFF2554 0.58 +0.5
616,738 - GFF2554 0.58 +1.7
616,755 + GFF2554 0.60 -0.1
616,755 + GFF2554 0.60 -0.9
616,755 + GFF2554 0.60 -1.1
616,755 + GFF2554 0.60 +0.8
616,755 + GFF2554 0.60 -1.3
616,755 + GFF2554 0.60 -0.7
616,755 + GFF2554 0.60 -1.8
616,755 + GFF2554 0.60 +0.6
616,755 + GFF2554 0.60 +0.5
616,756 - GFF2554 0.60 -1.4
616,756 - GFF2554 0.60 +0.4
616,756 - GFF2554 0.60 +2.2
616,756 - GFF2554 0.60 -0.5
616,756 - GFF2554 0.60 -1.1
616,756 - GFF2554 0.60 -3.7
616,756 - GFF2554 0.60 -3.2
616,756 - GFF2554 0.60 -1.4
616,797 + GFF2554 0.65 +0.9
616,797 + GFF2554 0.65 -0.4
616,798 - GFF2554 0.65 +0.1
616,798 - GFF2554 0.65 -1.3
616,890 + GFF2554 0.75 +0.9
616,890 + GFF2554 0.75 -0.4
616,890 + GFF2554 0.75 -0.2
616,890 + GFF2554 0.75 +0.3
616,890 + GFF2554 0.75 +3.4
616,891 - GFF2554 0.75 -1.2
616,926 + GFF2554 0.79 -1.8
616,926 + GFF2554 0.79 +0.8
616,926 + GFF2554 0.79 -0.4
616,926 + GFF2554 0.79 +0.0
616,926 + GFF2554 0.79 +0.5
616,927 - GFF2554 0.79 +2.1
616,927 - GFF2554 0.79 +0.0
616,927 - GFF2554 0.79 -2.1
616,927 - GFF2554 0.79 -3.1
616,927 - GFF2554 0.79 +1.6
616,927 - GFF2554 0.79 -0.7
616,927 - GFF2554 0.79 +0.2
616,941 + GFF2554 0.81 +1.3
616,941 + GFF2554 0.81 -1.4
616,941 + GFF2554 0.81 -1.2
616,941 + GFF2554 0.81 +0.9
616,941 + GFF2554 0.81 -0.7
616,941 + GFF2554 0.81 -1.2
616,941 + GFF2554 0.81 +0.5
616,941 + GFF2554 0.81 -0.9
616,941 + GFF2554 0.81 -0.3
616,941 + GFF2554 0.81 +1.9
616,942 - GFF2554 0.81 -2.8
616,942 - GFF2554 0.81 +2.1
616,942 - GFF2554 0.81 -1.4
616,942 - GFF2554 0.81 -1.6
616,942 - GFF2554 0.81 +2.5
616,942 - GFF2554 0.81 -0.8
616,942 - GFF2554 0.81 -0.2
617,368 + GFF2555 0.31 -1.8
617,368 + GFF2555 0.31 +2.0
617,369 - GFF2555 0.31 +1.6
617,369 - GFF2555 0.31 -1.4
617,369 - GFF2555 0.31 -1.7
617,369 - GFF2555 0.31 +1.9
617,369 - GFF2555 0.31 +0.5
617,515 + GFF2555 0.49 -0.9
617,515 + GFF2555 0.49 -0.4
617,515 + GFF2555 0.49 -0.1
617,515 + GFF2555 0.49 -0.3
617,515 + GFF2555 0.49 +0.3
617,515 + GFF2555 0.49 +0.6
617,515 + GFF2555 0.49 -1.0
617,515 + GFF2555 0.49 +0.0
617,516 - GFF2555 0.49 -1.4
617,516 - GFF2555 0.49 -0.1
617,516 - GFF2555 0.49 +0.5
617,516 - GFF2555 0.49 +2.4
617,516 - GFF2555 0.49 -0.3
617,516 - GFF2555 0.49 -1.5
617,516 - GFF2555 0.49 +2.1
617,516 - GFF2555 0.49 +1.1
617,516 - GFF2555 0.49 -2.4
617,516 - GFF2555 0.49 -0.4
617,516 - GFF2555 0.49 -1.4
617,614 + GFF2555 0.61 +0.1
617,614 + GFF2555 0.61 -1.8
617,614 + GFF2555 0.61 +0.4
617,614 + GFF2555 0.61 +0.9
617,614 + GFF2555 0.61 -0.7
617,615 - GFF2555 0.61 +0.6
617,656 + GFF2555 0.66 +0.8
617,656 + GFF2555 0.66 -0.3
617,656 + GFF2555 0.66 -0.5
617,656 + GFF2555 0.66 -0.3
617,656 + GFF2555 0.66 -1.4
617,656 + GFF2555 0.66 -0.7
617,657 - GFF2555 0.66 +0.1
617,657 - GFF2555 0.66 -1.3
617,657 - GFF2555 0.66 -1.4
617,657 - GFF2555 0.66 +0.5
617,657 - GFF2555 0.66 -0.7
617,657 - GFF2555 0.66 +0.4
617,657 - GFF2555 0.66 -2.3
617,657 - GFF2555 0.66 -0.2
617,950 + -3.0
617,950 + +1.0
617,950 + -1.3
617,950 + +1.4
617,950 + +0.6
617,951 - +0.8
617,951 - -0.6
617,951 - -0.5
617,951 - -0.2
618,020 - +1.3
618,020 - +1.6
618,032 + -0.3
618,032 + +0.3
618,032 + +0.3
618,032 + -0.5
618,033 - +0.7
618,033 - -0.4

Or see this region's nucleotide sequence