Strain Fitness in Variovorax sp. SCN45 around GFF2500

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2498 and GFF2499 overlap by 4 nucleotidesGFF2499 and GFF2500 overlap by 4 nucleotidesGFF2500 and GFF2501 are separated by 86 nucleotides GFF2498 - Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1), at 558,378 to 559,607 GFF2498 GFF2499 - ATP/GTP-binding protein, at 559,604 to 560,479 GFF2499 GFF2500 - Mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-), at 560,476 to 560,910 GFF2500 GFF2501 - O-antigen acetylase, at 560,997 to 562,961 GFF2501 Position (kb) 560 561Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 559.575 kb on + strandat 559.575 kb on + strandat 559.576 kb on - strandat 559.576 kb on - strandat 559.576 kb on - strandat 559.576 kb on - strandat 559.576 kb on - strandat 559.937 kb on + strand, within GFF2499at 559.937 kb on + strand, within GFF2499at 559.938 kb on - strand, within GFF2499at 560.081 kb on + strand, within GFF2499at 560.081 kb on + strand, within GFF2499at 560.081 kb on + strand, within GFF2499at 560.081 kb on + strand, within GFF2499at 560.081 kb on + strand, within GFF2499at 560.082 kb on - strand, within GFF2499at 560.082 kb on - strand, within GFF2499at 560.082 kb on - strand, within GFF2499at 560.082 kb on - strand, within GFF2499at 560.144 kb on + strand, within GFF2499at 560.145 kb on - strand, within GFF2499at 560.145 kb on - strand, within GFF2499at 560.145 kb on - strand, within GFF2499at 560.180 kb on + strand, within GFF2499at 560.181 kb on - strand, within GFF2499at 560.181 kb on - strand, within GFF2499at 560.201 kb on + strand, within GFF2499at 560.201 kb on + strand, within GFF2499at 560.202 kb on - strand, within GFF2499at 560.202 kb on - strand, within GFF2499at 560.294 kb on + strand, within GFF2499at 560.294 kb on + strand, within GFF2499at 560.295 kb on - strand, within GFF2499at 560.295 kb on - strand, within GFF2499at 560.295 kb on - strand, within GFF2499at 560.295 kb on - strand, within GFF2499at 560.315 kb on + strand, within GFF2499at 560.315 kb on + strand, within GFF2499at 560.316 kb on - strand, within GFF2499at 560.316 kb on - strand, within GFF2499at 560.438 kb on + strandat 560.439 kb on - strandat 560.456 kb on + strandat 560.457 kb on - strandat 560.457 kb on - strandat 560.575 kb on + strand, within GFF2500at 560.575 kb on + strand, within GFF2500at 560.576 kb on - strand, within GFF2500at 560.584 kb on + strand, within GFF2500at 560.585 kb on - strand, within GFF2500at 560.713 kb on + strand, within GFF2500at 560.908 kb on + strandat 560.908 kb on + strandat 560.909 kb on - strandat 560.909 kb on - strandat 560.909 kb on - strandat 560.973 kb on + strandat 561.009 kb on + strandat 561.009 kb on + strandat 561.009 kb on + strandat 561.009 kb on + strandat 561.010 kb on - strandat 561.010 kb on - strandat 561.031 kb on + strandat 561.032 kb on - strandat 561.063 kb on + strandat 561.063 kb on + strandat 561.063 kb on + strandat 561.064 kb on - strandat 561.064 kb on - strandat 561.178 kb on + strandat 561.195 kb on + strand, within GFF2501at 561.195 kb on + strand, within GFF2501at 561.195 kb on + strand, within GFF2501at 561.195 kb on + strand, within GFF2501at 561.195 kb on + strand, within GFF2501at 561.196 kb on - strand, within GFF2501at 561.217 kb on + strand, within GFF2501at 561.217 kb on + strand, within GFF2501at 561.217 kb on + strand, within GFF2501at 561.218 kb on - strand, within GFF2501at 561.267 kb on + strand, within GFF2501at 561.267 kb on + strand, within GFF2501at 561.268 kb on - strand, within GFF2501at 561.268 kb on - strand, within GFF2501at 561.268 kb on - strand, within GFF2501at 561.363 kb on + strand, within GFF2501at 561.432 kb on + strand, within GFF2501at 561.433 kb on - strand, within GFF2501at 561.433 kb on - strand, within GFF2501at 561.434 kb on + strand, within GFF2501at 561.434 kb on + strand, within GFF2501at 561.435 kb on - strand, within GFF2501at 561.497 kb on - strand, within GFF2501at 561.567 kb on + strand, within GFF2501at 561.567 kb on + strand, within GFF2501at 561.567 kb on + strand, within GFF2501at 561.567 kb on + strand, within GFF2501at 561.567 kb on + strand, within GFF2501at 561.568 kb on - strand, within GFF2501at 561.755 kb on + strand, within GFF2501at 561.755 kb on + strand, within GFF2501at 561.755 kb on + strand, within GFF2501at 561.756 kb on - strand, within GFF2501at 561.810 kb on + strand, within GFF2501at 561.810 kb on + strand, within GFF2501at 561.811 kb on - strand, within GFF2501at 561.811 kb on - strand, within GFF2501at 561.811 kb on - strand, within GFF2501at 561.811 kb on - strand, within GFF2501at 561.811 kb on - strand, within GFF2501at 561.835 kb on + strand, within GFF2501at 561.835 kb on + strand, within GFF2501at 561.836 kb on - strand, within GFF2501at 561.836 kb on - strand, within GFF2501at 561.836 kb on - strand, within GFF2501at 561.855 kb on + strand, within GFF2501at 561.856 kb on - strand, within GFF2501at 561.864 kb on + strand, within GFF2501at 561.864 kb on + strand, within GFF2501at 561.864 kb on + strand, within GFF2501at 561.865 kb on - strand, within GFF2501at 561.865 kb on - strand, within GFF2501at 561.891 kb on + strand, within GFF2501at 561.891 kb on + strand, within GFF2501at 561.891 kb on + strand, within GFF2501at 561.891 kb on + strand, within GFF2501at 561.891 kb on + strand, within GFF2501at 561.891 kb on + strand, within GFF2501at 561.892 kb on - strand, within GFF2501at 561.892 kb on - strand, within GFF2501at 561.892 kb on - strand, within GFF2501at 561.892 kb on - strand, within GFF2501at 561.892 kb on - strand, within GFF2501at 561.892 kb on - strand, within GFF2501

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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559,575 + +0.7
559,575 + +1.2
559,576 - -1.3
559,576 - -2.5
559,576 - -1.8
559,576 - -0.9
559,576 - -3.4
559,937 + GFF2499 0.38 -1.6
559,937 + GFF2499 0.38 -1.4
559,938 - GFF2499 0.38 +0.1
560,081 + GFF2499 0.54 -5.1
560,081 + GFF2499 0.54 -1.7
560,081 + GFF2499 0.54 -0.9
560,081 + GFF2499 0.54 +0.5
560,081 + GFF2499 0.54 -1.1
560,082 - GFF2499 0.55 +1.6
560,082 - GFF2499 0.55 -0.2
560,082 - GFF2499 0.55 -2.1
560,082 - GFF2499 0.55 -1.6
560,144 + GFF2499 0.62 -1.4
560,145 - GFF2499 0.62 -0.7
560,145 - GFF2499 0.62 -4.4
560,145 - GFF2499 0.62 -2.7
560,180 + GFF2499 0.66 -2.8
560,181 - GFF2499 0.66 -0.9
560,181 - GFF2499 0.66 -0.5
560,201 + GFF2499 0.68 -1.5
560,201 + GFF2499 0.68 -0.8
560,202 - GFF2499 0.68 -3.2
560,202 - GFF2499 0.68 -5.1
560,294 + GFF2499 0.79 -1.8
560,294 + GFF2499 0.79 -1.9
560,295 - GFF2499 0.79 -0.7
560,295 - GFF2499 0.79 -2.5
560,295 - GFF2499 0.79 +0.0
560,295 - GFF2499 0.79 -2.0
560,315 + GFF2499 0.81 -3.0
560,315 + GFF2499 0.81 -1.4
560,316 - GFF2499 0.81 -1.8
560,316 - GFF2499 0.81 -2.8
560,438 + -0.4
560,439 - -0.7
560,456 + -3.9
560,457 - -0.6
560,457 - -1.4
560,575 + GFF2500 0.23 -0.3
560,575 + GFF2500 0.23 -1.3
560,576 - GFF2500 0.23 -0.5
560,584 + GFF2500 0.25 +0.1
560,585 - GFF2500 0.25 +0.3
560,713 + GFF2500 0.54 -0.9
560,908 + -1.1
560,908 + -1.5
560,909 - +2.1
560,909 - +0.5
560,909 - -2.2
560,973 + -1.5
561,009 + +1.1
561,009 + -1.8
561,009 + -2.1
561,009 + +0.1
561,010 - -0.4
561,010 - -0.0
561,031 + -3.2
561,032 - +1.9
561,063 + +1.4
561,063 + +0.2
561,063 + -0.3
561,064 - +0.4
561,064 - +0.1
561,178 + -0.9
561,195 + GFF2501 0.10 -0.1
561,195 + GFF2501 0.10 -1.9
561,195 + GFF2501 0.10 -3.3
561,195 + GFF2501 0.10 -2.2
561,195 + GFF2501 0.10 +0.5
561,196 - GFF2501 0.10 +0.7
561,217 + GFF2501 0.11 +0.1
561,217 + GFF2501 0.11 -0.2
561,217 + GFF2501 0.11 +0.1
561,218 - GFF2501 0.11 -2.6
561,267 + GFF2501 0.14 -2.8
561,267 + GFF2501 0.14 -1.4
561,268 - GFF2501 0.14 -2.5
561,268 - GFF2501 0.14 -1.7
561,268 - GFF2501 0.14 -2.7
561,363 + GFF2501 0.19 -0.2
561,432 + GFF2501 0.22 +0.3
561,433 - GFF2501 0.22 -3.3
561,433 - GFF2501 0.22 +0.6
561,434 + GFF2501 0.22 -2.5
561,434 + GFF2501 0.22 -2.3
561,435 - GFF2501 0.22 +0.2
561,497 - GFF2501 0.25 -2.5
561,567 + GFF2501 0.29 -3.1
561,567 + GFF2501 0.29 +0.9
561,567 + GFF2501 0.29 -2.2
561,567 + GFF2501 0.29 -0.6
561,567 + GFF2501 0.29 -0.5
561,568 - GFF2501 0.29 -1.0
561,755 + GFF2501 0.39 -0.4
561,755 + GFF2501 0.39 +0.4
561,755 + GFF2501 0.39 -1.6
561,756 - GFF2501 0.39 +0.7
561,810 + GFF2501 0.41 -3.6
561,810 + GFF2501 0.41 +0.1
561,811 - GFF2501 0.41 -2.6
561,811 - GFF2501 0.41 -0.5
561,811 - GFF2501 0.41 +0.3
561,811 - GFF2501 0.41 +0.3
561,811 - GFF2501 0.41 +0.3
561,835 + GFF2501 0.43 +0.7
561,835 + GFF2501 0.43 -0.0
561,836 - GFF2501 0.43 -1.4
561,836 - GFF2501 0.43 -1.3
561,836 - GFF2501 0.43 +0.7
561,855 + GFF2501 0.44 -0.1
561,856 - GFF2501 0.44 +0.5
561,864 + GFF2501 0.44 -1.0
561,864 + GFF2501 0.44 +0.8
561,864 + GFF2501 0.44 -0.7
561,865 - GFF2501 0.44 +3.0
561,865 - GFF2501 0.44 +0.5
561,891 + GFF2501 0.45 -0.2
561,891 + GFF2501 0.45 +0.5
561,891 + GFF2501 0.45 -1.1
561,891 + GFF2501 0.45 -2.9
561,891 + GFF2501 0.45 -2.5
561,891 + GFF2501 0.45 +0.6
561,892 - GFF2501 0.46 -2.2
561,892 - GFF2501 0.46 -2.5
561,892 - GFF2501 0.46 +0.4
561,892 - GFF2501 0.46 -0.4
561,892 - GFF2501 0.46 -0.9
561,892 - GFF2501 0.46 +0.1

Or see this region's nucleotide sequence