Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2473 and GFF2474 are separated by 214 nucleotides GFF2474 and GFF2475 overlap by 4 nucleotides GFF2475 and GFF2476 are separated by 130 nucleotides GFF2476 and GFF2477 are separated by 37 nucleotides
GFF2473 - hypothetical protein, at 532,282 to 532,893
GFF2473
GFF2474 - Two-component transcriptional response regulator SMc02366, LuxR family, at 533,108 to 533,791
GFF2474
GFF2475 - no description, at 533,788 to 535,158
GFF2475
GFF2476 - Tripartite tricarboxylate transporter TctB family, at 535,289 to 535,777
GFF2476
GFF2477 - Tripartite tricarboxylate transporter TctA family, at 535,815 to 537,326
GFF2477
Position (kb) 533
534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 532.822 kb on + strand, within GFF2473 at 532.822 kb on + strand, within GFF2473 at 532.823 kb on - strand, within GFF2473 at 532.823 kb on - strand, within GFF2473 at 532.891 kb on + strand at 532.891 kb on + strand at 532.892 kb on - strand at 532.892 kb on - strand at 532.916 kb on - strand at 532.953 kb on + strand at 532.954 kb on - strand at 533.055 kb on + strand at 533.095 kb on - strand at 533.095 kb on - strand at 533.095 kb on - strand at 533.153 kb on + strand at 533.405 kb on + strand, within GFF2474 at 533.405 kb on + strand, within GFF2474 at 533.406 kb on - strand, within GFF2474 at 533.658 kb on - strand, within GFF2474 at 533.843 kb on - strand at 533.894 kb on - strand at 534.052 kb on + strand, within GFF2475 at 534.052 kb on + strand, within GFF2475 at 534.178 kb on + strand, within GFF2475 at 534.887 kb on - strand, within GFF2475 at 535.210 kb on + strand at 535.210 kb on + strand at 535.210 kb on + strand at 535.210 kb on + strand at 535.374 kb on - strand, within GFF2476 at 535.374 kb on - strand, within GFF2476 at 535.374 kb on - strand, within GFF2476 at 535.374 kb on - strand, within GFF2476 at 535.409 kb on + strand, within GFF2476 at 535.410 kb on - strand, within GFF2476 at 535.622 kb on + strand, within GFF2476 at 535.623 kb on - strand, within GFF2476 at 535.712 kb on + strand, within GFF2476 at 535.712 kb on + strand, within GFF2476 at 535.713 kb on - strand, within GFF2476 at 535.764 kb on + strand at 535.826 kb on + strand at 535.827 kb on - strand at 536.106 kb on + strand, within GFF2477
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 532,822 + GFF2473 0.88 -2.2 532,822 + GFF2473 0.88 -3.0 532,823 - GFF2473 0.88 -0.1 532,823 - GFF2473 0.88 -0.1 532,891 + -3.3 532,891 + -0.5 532,892 - +2.0 532,892 - -2.1 532,916 - +0.8 532,953 + -0.3 532,954 - +0.1 533,055 + -0.5 533,095 - -1.8 533,095 - -2.6 533,095 - +2.5 533,153 + -3.3 533,405 + GFF2474 0.43 -0.9 533,405 + GFF2474 0.43 -0.6 533,406 - GFF2474 0.44 -1.3 533,658 - GFF2474 0.80 -1.6 533,843 - -3.6 533,894 - +2.3 534,052 + GFF2475 0.19 -2.0 534,052 + GFF2475 0.19 +1.6 534,178 + GFF2475 0.28 -0.7 534,887 - GFF2475 0.80 -0.9 535,210 + -1.4 535,210 + +0.6 535,210 + -0.3 535,210 + +0.8 535,374 - GFF2476 0.17 +1.1 535,374 - GFF2476 0.17 -1.3 535,374 - GFF2476 0.17 -0.2 535,374 - GFF2476 0.17 +0.1 535,409 + GFF2476 0.25 +0.1 535,410 - GFF2476 0.25 -1.1 535,622 + GFF2476 0.68 +0.5 535,623 - GFF2476 0.68 +0.3 535,712 + GFF2476 0.87 +1.4 535,712 + GFF2476 0.87 +0.5 535,713 - GFF2476 0.87 -1.8 535,764 + -2.3 535,826 + -0.4 535,827 - +0.1 536,106 + GFF2477 0.19 -0.6
Or see this region's nucleotide sequence