Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2450 and GFF2451 are separated by 16 nucleotides GFF2451 and GFF2452 are separated by 92 nucleotides
GFF2450 - Dihydropyrimidinase (EC 3.5.2.2) @ D-hydantoinase (EC 3.5.2.2), at 505,238 to 506,677
GFF2450
GFF2451 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 506,694 to 508,199
GFF2451
GFF2452 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreA (EC 1.3.1.1), at 508,292 to 509,602
GFF2452
Position (kb) 506
507
508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 505.890 kb on - strand, within GFF2450 at 505.971 kb on + strand, within GFF2450 at 505.971 kb on + strand, within GFF2450 at 505.972 kb on - strand, within GFF2450 at 506.319 kb on + strand, within GFF2450 at 506.319 kb on + strand, within GFF2450 at 506.529 kb on + strand, within GFF2450 at 506.529 kb on + strand, within GFF2450 at 506.530 kb on - strand, within GFF2450 at 506.669 kb on + strand at 506.669 kb on + strand at 506.669 kb on + strand at 506.696 kb on - strand at 506.764 kb on + strand at 506.803 kb on + strand at 506.803 kb on + strand at 506.803 kb on + strand at 506.803 kb on + strand at 506.803 kb on + strand at 506.803 kb on + strand at 506.803 kb on + strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.804 kb on - strand at 506.809 kb on + strand at 506.809 kb on + strand at 506.809 kb on + strand at 506.809 kb on + strand at 506.809 kb on + strand at 506.809 kb on + strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.810 kb on - strand at 506.945 kb on - strand, within GFF2451 at 506.945 kb on - strand, within GFF2451 at 507.001 kb on + strand, within GFF2451 at 507.001 kb on + strand, within GFF2451 at 507.002 kb on - strand, within GFF2451 at 507.002 kb on - strand, within GFF2451 at 507.004 kb on + strand, within GFF2451 at 507.005 kb on - strand, within GFF2451 at 507.005 kb on - strand, within GFF2451 at 507.005 kb on - strand, within GFF2451 at 507.073 kb on + strand, within GFF2451 at 507.187 kb on + strand, within GFF2451 at 507.643 kb on + strand, within GFF2451 at 507.643 kb on + strand, within GFF2451 at 507.644 kb on - strand, within GFF2451 at 507.688 kb on + strand, within GFF2451 at 507.802 kb on + strand, within GFF2451 at 507.802 kb on + strand, within GFF2451 at 507.802 kb on + strand, within GFF2451 at 507.803 kb on - strand, within GFF2451 at 507.803 kb on - strand, within GFF2451 at 507.934 kb on + strand, within GFF2451 at 507.934 kb on + strand, within GFF2451 at 508.057 kb on + strand at 508.106 kb on - strand at 508.106 kb on - strand at 508.348 kb on - strand at 508.485 kb on + strand, within GFF2452 at 508.486 kb on - strand, within GFF2452 at 508.734 kb on + strand, within GFF2452 at 508.735 kb on - strand, within GFF2452 at 508.735 kb on - strand, within GFF2452 at 508.735 kb on - strand, within GFF2452 at 508.876 kb on + strand, within GFF2452 at 508.876 kb on + strand, within GFF2452 at 508.876 kb on + strand, within GFF2452 at 508.877 kb on - strand, within GFF2452 at 508.877 kb on - strand, within GFF2452 at 509.100 kb on + strand, within GFF2452 at 509.133 kb on + strand, within GFF2452 at 509.133 kb on + strand, within GFF2452
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 505,890 - GFF2450 0.45 -2.5 505,971 + GFF2450 0.51 -1.8 505,971 + GFF2450 0.51 -2.1 505,972 - GFF2450 0.51 +0.9 506,319 + GFF2450 0.75 +0.6 506,319 + GFF2450 0.75 -1.0 506,529 + GFF2450 0.90 -2.0 506,529 + GFF2450 0.90 +0.4 506,530 - GFF2450 0.90 -0.7 506,669 + +1.2 506,669 + +0.8 506,669 + -2.4 506,696 - +0.8 506,764 + -0.7 506,803 + -0.3 506,803 + -1.4 506,803 + +0.2 506,803 + -1.6 506,803 + +2.1 506,803 + +1.9 506,803 + -1.4 506,804 - -0.3 506,804 - +0.8 506,804 - -2.4 506,804 - -2.1 506,804 - +1.4 506,804 - +0.5 506,804 - +0.8 506,804 - -0.4 506,804 - +1.3 506,809 + -0.1 506,809 + -0.9 506,809 + -2.7 506,809 + -3.1 506,809 + -1.0 506,809 + +1.4 506,810 - +0.8 506,810 - -0.4 506,810 - -1.6 506,810 - +0.5 506,810 - +0.6 506,810 - +1.4 506,810 - -0.9 506,810 - +1.1 506,810 - +0.4 506,945 - GFF2451 0.17 +3.4 506,945 - GFF2451 0.17 +0.9 507,001 + GFF2451 0.20 +0.1 507,001 + GFF2451 0.20 +0.7 507,002 - GFF2451 0.20 -0.7 507,002 - GFF2451 0.20 -2.7 507,004 + GFF2451 0.21 +0.1 507,005 - GFF2451 0.21 -0.7 507,005 - GFF2451 0.21 -0.5 507,005 - GFF2451 0.21 +0.4 507,073 + GFF2451 0.25 -2.5 507,187 + GFF2451 0.33 +0.0 507,643 + GFF2451 0.63 -1.6 507,643 + GFF2451 0.63 -0.9 507,644 - GFF2451 0.63 -1.9 507,688 + GFF2451 0.66 -1.3 507,802 + GFF2451 0.74 +0.3 507,802 + GFF2451 0.74 -1.5 507,802 + GFF2451 0.74 +2.1 507,803 - GFF2451 0.74 +1.0 507,803 - GFF2451 0.74 -1.3 507,934 + GFF2451 0.82 -1.2 507,934 + GFF2451 0.82 +1.9 508,057 + +0.6 508,106 - -3.2 508,106 - -1.2 508,348 - +0.8 508,485 + GFF2452 0.15 +3.6 508,486 - GFF2452 0.15 +1.2 508,734 + GFF2452 0.34 +2.7 508,735 - GFF2452 0.34 -0.3 508,735 - GFF2452 0.34 -1.6 508,735 - GFF2452 0.34 +0.1 508,876 + GFF2452 0.45 -2.0 508,876 + GFF2452 0.45 -1.7 508,876 + GFF2452 0.45 -0.7 508,877 - GFF2452 0.45 -0.1 508,877 - GFF2452 0.45 -0.6 509,100 + GFF2452 0.62 +0.2 509,133 + GFF2452 0.64 -0.3 509,133 + GFF2452 0.64 -2.0
Or see this region's nucleotide sequence