Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2115 and GFF2116 are separated by 244 nucleotides GFF2116 and GFF2117 are separated by 223 nucleotides GFF2117 and GFF2118 overlap by 4 nucleotides
GFF2115 - transcriptional regulator, AraC family, at 164,680 to 165,492
GFF2115
GFF2116 - Cytochrome P450, at 165,737 to 167,131
GFF2116
GFF2117 - KEGG: type IV fimbrial biogenesis protein FimT, at 167,355 to 167,906
GFF2117
GFF2118 - hypothetical protein, at 167,903 to 168,460
GFF2118
Position (kb) 165
166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.627 kb on - strand at 166.323 kb on - strand, within GFF2116 at 166.323 kb on - strand, within GFF2116 at 166.925 kb on + strand, within GFF2116 at 166.925 kb on + strand, within GFF2116 at 166.925 kb on + strand, within GFF2116 at 166.925 kb on + strand, within GFF2116 at 166.925 kb on + strand, within GFF2116 at 166.925 kb on + strand, within GFF2116 at 166.925 kb on + strand, within GFF2116 at 166.925 kb on + strand, within GFF2116 at 166.925 kb on + strand, within GFF2116 at 166.925 kb on + strand, within GFF2116 at 166.926 kb on - strand, within GFF2116 at 166.926 kb on - strand, within GFF2116 at 166.927 kb on + strand, within GFF2116 at 166.927 kb on + strand, within GFF2116 at 166.927 kb on + strand, within GFF2116 at 166.928 kb on - strand, within GFF2116 at 166.953 kb on + strand, within GFF2116 at 166.953 kb on + strand, within GFF2116 at 166.953 kb on + strand, within GFF2116 at 166.953 kb on + strand, within GFF2116 at 166.953 kb on + strand, within GFF2116 at 166.954 kb on - strand, within GFF2116 at 167.254 kb on + strand at 167.274 kb on + strand at 167.464 kb on + strand, within GFF2117 at 167.464 kb on + strand, within GFF2117 at 167.464 kb on + strand, within GFF2117 at 167.497 kb on - strand, within GFF2117 at 167.517 kb on + strand, within GFF2117 at 167.742 kb on + strand, within GFF2117 at 167.742 kb on + strand, within GFF2117 at 167.743 kb on - strand, within GFF2117 at 167.743 kb on - strand, within GFF2117 at 167.743 kb on - strand, within GFF2117 at 167.743 kb on - strand, within GFF2117 at 168.028 kb on + strand, within GFF2118
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 165,627 - -1.1 166,323 - GFF2116 0.42 +1.0 166,323 - GFF2116 0.42 -0.1 166,925 + GFF2116 0.85 -0.9 166,925 + GFF2116 0.85 -0.8 166,925 + GFF2116 0.85 -1.2 166,925 + GFF2116 0.85 -0.9 166,925 + GFF2116 0.85 -0.9 166,925 + GFF2116 0.85 -1.5 166,925 + GFF2116 0.85 +0.0 166,925 + GFF2116 0.85 -0.3 166,925 + GFF2116 0.85 +0.6 166,925 + GFF2116 0.85 +2.3 166,926 - GFF2116 0.85 -2.9 166,926 - GFF2116 0.85 -0.7 166,927 + GFF2116 0.85 -0.5 166,927 + GFF2116 0.85 -1.4 166,927 + GFF2116 0.85 +0.7 166,928 - GFF2116 0.85 +1.3 166,953 + GFF2116 0.87 +0.5 166,953 + GFF2116 0.87 +0.2 166,953 + GFF2116 0.87 -1.0 166,953 + GFF2116 0.87 -3.5 166,953 + GFF2116 0.87 +1.4 166,954 - GFF2116 0.87 -0.3 167,254 + -1.7 167,274 + +1.6 167,464 + GFF2117 0.20 -0.6 167,464 + GFF2117 0.20 -0.5 167,464 + GFF2117 0.20 +1.4 167,497 - GFF2117 0.26 +2.1 167,517 + GFF2117 0.29 +2.1 167,742 + GFF2117 0.70 +0.3 167,742 + GFF2117 0.70 +0.1 167,743 - GFF2117 0.70 -0.5 167,743 - GFF2117 0.70 +1.1 167,743 - GFF2117 0.70 -2.2 167,743 - GFF2117 0.70 -2.4 168,028 + GFF2118 0.22 -2.2
Or see this region's nucleotide sequence