Strain Fitness in Variovorax sp. SCN45 around GFF203

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF202 and GFF203 are separated by 21 nucleotidesGFF203 and GFF204 are separated by 247 nucleotidesGFF204 and GFF205 are separated by 42 nucleotides GFF202 - Transcriptional regulator, LysR family, at 229,867 to 230,781 GFF202 GFF203 - hypothetical protein, at 230,803 to 231,339 GFF203 GFF204 - hypothetical protein, at 231,587 to 232,216 GFF204 GFF205 - Nitroreductase family protein, at 232,259 to 232,879 GFF205 Position (kb) 230 231 232Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 230.090 kb on - strand, within GFF202at 230.090 kb on - strand, within GFF202at 230.194 kb on + strand, within GFF202at 230.194 kb on + strand, within GFF202at 230.195 kb on - strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.857 kb on + strand, within GFF203at 230.857 kb on + strand, within GFF203at 230.857 kb on + strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.942 kb on + strand, within GFF203at 230.942 kb on + strand, within GFF203at 230.943 kb on - strand, within GFF203at 230.943 kb on - strand, within GFF203at 231.086 kb on + strand, within GFF203at 231.087 kb on - strand, within GFF203at 231.087 kb on - strand, within GFF203at 231.087 kb on - strand, within GFF203at 231.686 kb on + strand, within GFF204at 231.686 kb on + strand, within GFF204at 231.687 kb on - strand, within GFF204at 231.687 kb on - strand, within GFF204at 231.687 kb on - strand, within GFF204at 231.716 kb on + strand, within GFF204at 231.716 kb on + strand, within GFF204at 231.717 kb on - strand, within GFF204at 231.717 kb on - strand, within GFF204at 231.717 kb on - strand, within GFF204at 231.788 kb on + strand, within GFF204at 231.788 kb on + strand, within GFF204at 231.788 kb on + strand, within GFF204at 231.788 kb on + strand, within GFF204at 231.788 kb on + strand, within GFF204at 231.788 kb on + strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.843 kb on - strand, within GFF204at 231.890 kb on + strand, within GFF204at 231.891 kb on - strand, within GFF204at 231.891 kb on - strand, within GFF204at 231.891 kb on - strand, within GFF204at 231.891 kb on - strand, within GFF204at 232.143 kb on - strand, within GFF204at 232.143 kb on - strand, within GFF204at 232.148 kb on + strand, within GFF204at 232.148 kb on + strand, within GFF204at 232.149 kb on - strand, within GFF204at 232.149 kb on - strand, within GFF204at 232.149 kb on - strand, within GFF204at 232.214 kb on + strandat 232.214 kb on + strandat 232.214 kb on + strandat 232.215 kb on - strandat 232.215 kb on - strandat 232.215 kb on - strandat 232.215 kb on - strandat 232.215 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
230,090 - GFF202 0.24 -0.8
230,090 - GFF202 0.24 -0.2
230,194 + GFF202 0.36 -3.8
230,194 + GFF202 0.36 -2.4
230,195 - GFF202 0.36 -3.0
230,380 + GFF202 0.56 -2.2
230,380 + GFF202 0.56 +0.1
230,380 + GFF202 0.56 -0.4
230,380 + GFF202 0.56 -2.2
230,380 + GFF202 0.56 -1.8
230,380 + GFF202 0.56 +0.4
230,380 + GFF202 0.56 +1.2
230,380 + GFF202 0.56 +1.9
230,381 - GFF202 0.56 +0.2
230,381 - GFF202 0.56 +1.3
230,381 - GFF202 0.56 -0.3
230,381 - GFF202 0.56 -1.0
230,381 - GFF202 0.56 -0.1
230,381 - GFF202 0.56 +1.6
230,381 - GFF202 0.56 -3.5
230,857 + GFF203 0.10 -1.0
230,857 + GFF203 0.10 -2.3
230,857 + GFF203 0.10 -1.8
230,858 - GFF203 0.10 -1.6
230,858 - GFF203 0.10 +0.7
230,858 - GFF203 0.10 -0.4
230,858 - GFF203 0.10 +0.7
230,858 - GFF203 0.10 -0.7
230,942 + GFF203 0.26 +0.2
230,942 + GFF203 0.26 +0.6
230,943 - GFF203 0.26 -0.3
230,943 - GFF203 0.26 -2.7
231,086 + GFF203 0.53 -2.2
231,087 - GFF203 0.53 -1.5
231,087 - GFF203 0.53 +0.3
231,087 - GFF203 0.53 -1.8
231,686 + GFF204 0.16 -2.0
231,686 + GFF204 0.16 +1.4
231,687 - GFF204 0.16 -2.0
231,687 - GFF204 0.16 -0.0
231,687 - GFF204 0.16 -0.8
231,716 + GFF204 0.20 +0.2
231,716 + GFF204 0.20 +0.7
231,717 - GFF204 0.21 -0.5
231,717 - GFF204 0.21 -0.8
231,717 - GFF204 0.21 +2.2
231,788 + GFF204 0.32 -0.6
231,788 + GFF204 0.32 -0.9
231,788 + GFF204 0.32 -0.7
231,788 + GFF204 0.32 -1.3
231,788 + GFF204 0.32 -3.4
231,788 + GFF204 0.32 +3.2
231,789 - GFF204 0.32 -0.5
231,789 - GFF204 0.32 +1.5
231,789 - GFF204 0.32 -2.3
231,789 - GFF204 0.32 +2.3
231,789 - GFF204 0.32 -2.4
231,789 - GFF204 0.32 -1.5
231,789 - GFF204 0.32 -1.5
231,843 - GFF204 0.41 -3.2
231,890 + GFF204 0.48 -1.1
231,891 - GFF204 0.48 +0.7
231,891 - GFF204 0.48 -1.3
231,891 - GFF204 0.48 +0.3
231,891 - GFF204 0.48 +0.6
232,143 - GFF204 0.88 -0.4
232,143 - GFF204 0.88 -0.3
232,148 + GFF204 0.89 +0.4
232,148 + GFF204 0.89 -1.1
232,149 - GFF204 0.89 +0.7
232,149 - GFF204 0.89 -0.1
232,149 - GFF204 0.89 -1.8
232,214 + -0.6
232,214 + -3.6
232,214 + +0.2
232,215 - -1.3
232,215 - +1.1
232,215 - -2.4
232,215 - -2.1
232,215 - -0.5

Or see this region's nucleotide sequence