Strain Fitness in Variovorax sp. SCN45 around GFF1853

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1852 and GFF1853 are separated by 104 nucleotidesGFF1853 and GFF1854 are separated by 13 nucleotidesGFF1854 and GFF1855 are separated by 160 nucleotides GFF1852 - FHA domain protein, at 527,802 to 528,740 GFF1852 GFF1853 - no description, at 528,845 to 529,504 GFF1853 GFF1854 - hypothetical protein, at 529,518 to 530,003 GFF1854 GFF1855 - no description, at 530,164 to 531,324 GFF1855 Position (kb) 528 529 530Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 527.911 kb on + strand, within GFF1852at 527.911 kb on + strand, within GFF1852at 527.911 kb on + strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 527.912 kb on - strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.201 kb on + strand, within GFF1852at 528.202 kb on - strand, within GFF1852at 528.202 kb on - strand, within GFF1852at 528.202 kb on - strand, within GFF1852at 528.202 kb on - strand, within GFF1852at 528.202 kb on - strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.468 kb on + strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.469 kb on - strand, within GFF1852at 528.588 kb on + strand, within GFF1852at 528.588 kb on + strand, within GFF1852at 528.588 kb on + strand, within GFF1852at 528.588 kb on + strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.589 kb on - strand, within GFF1852at 528.625 kb on + strand, within GFF1852at 528.625 kb on + strand, within GFF1852at 528.626 kb on - strand, within GFF1852at 528.626 kb on - strand, within GFF1852at 528.626 kb on - strand, within GFF1852at 528.703 kb on - strandat 528.738 kb on + strandat 528.748 kb on + strandat 528.748 kb on + strandat 528.748 kb on + strandat 528.748 kb on + strandat 528.749 kb on - strandat 528.774 kb on + strandat 528.774 kb on + strandat 528.775 kb on - strandat 528.775 kb on - strandat 528.968 kb on + strand, within GFF1853at 528.968 kb on + strand, within GFF1853at 528.968 kb on + strand, within GFF1853at 528.968 kb on + strand, within GFF1853at 529.085 kb on + strand, within GFF1853at 529.085 kb on + strand, within GFF1853at 529.085 kb on + strand, within GFF1853at 529.085 kb on + strand, within GFF1853at 529.085 kb on + strand, within GFF1853at 529.086 kb on - strand, within GFF1853at 529.086 kb on - strand, within GFF1853at 529.086 kb on - strand, within GFF1853at 529.086 kb on - strand, within GFF1853at 529.139 kb on + strand, within GFF1853at 529.140 kb on - strand, within GFF1853at 529.140 kb on - strand, within GFF1853at 529.140 kb on - strand, within GFF1853at 529.184 kb on + strand, within GFF1853at 529.184 kb on + strand, within GFF1853at 529.184 kb on + strand, within GFF1853at 529.184 kb on + strand, within GFF1853at 529.185 kb on - strand, within GFF1853at 529.185 kb on - strand, within GFF1853at 529.185 kb on - strand, within GFF1853at 529.185 kb on - strand, within GFF1853at 529.259 kb on + strand, within GFF1853at 529.259 kb on + strand, within GFF1853at 529.314 kb on - strand, within GFF1853at 529.325 kb on + strand, within GFF1853at 529.334 kb on + strand, within GFF1853at 529.535 kb on + strandat 529.536 kb on - strandat 529.761 kb on + strand, within GFF1854at 529.762 kb on - strand, within GFF1854at 529.762 kb on - strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.818 kb on + strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.819 kb on - strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.821 kb on + strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.822 kb on - strand, within GFF1854at 529.922 kb on - strand, within GFF1854at 530.001 kb on + strandat 530.085 kb on + strandat 530.086 kb on - strandat 530.145 kb on - strandat 530.145 kb on - strandat 530.158 kb on + strandat 530.158 kb on + strandat 530.158 kb on + strandat 530.158 kb on + strandat 530.158 kb on + strandat 530.158 kb on + strandat 530.159 kb on - strandat 530.159 kb on - strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.230 kb on + strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.231 kb on - strandat 530.305 kb on + strand, within GFF1855at 530.305 kb on + strand, within GFF1855at 530.305 kb on + strand, within GFF1855at 530.305 kb on + strand, within GFF1855at 530.305 kb on + strand, within GFF1855at 530.305 kb on + strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.306 kb on - strand, within GFF1855at 530.437 kb on + strand, within GFF1855at 530.437 kb on + strand, within GFF1855at 530.437 kb on + strand, within GFF1855at 530.437 kb on + strand, within GFF1855at 530.438 kb on - strand, within GFF1855at 530.438 kb on - strand, within GFF1855

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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527,911 + GFF1852 0.12 +1.5
527,911 + GFF1852 0.12 -2.3
527,911 + GFF1852 0.12 -1.5
527,912 - GFF1852 0.12 -0.8
527,912 - GFF1852 0.12 -1.4
527,912 - GFF1852 0.12 -0.6
527,912 - GFF1852 0.12 -1.3
527,912 - GFF1852 0.12 +2.9
527,912 - GFF1852 0.12 -1.3
527,912 - GFF1852 0.12 -1.5
527,912 - GFF1852 0.12 +0.5
527,912 - GFF1852 0.12 -1.5
528,201 + GFF1852 0.42 +0.7
528,201 + GFF1852 0.42 -0.0
528,201 + GFF1852 0.42 -0.7
528,201 + GFF1852 0.42 -2.5
528,201 + GFF1852 0.42 +0.9
528,201 + GFF1852 0.42 -2.1
528,201 + GFF1852 0.42 +0.6
528,201 + GFF1852 0.42 -0.4
528,201 + GFF1852 0.42 -0.5
528,202 - GFF1852 0.43 +1.6
528,202 - GFF1852 0.43 -1.7
528,202 - GFF1852 0.43 -2.2
528,202 - GFF1852 0.43 -0.2
528,202 - GFF1852 0.43 +0.5
528,468 + GFF1852 0.71 -3.8
528,468 + GFF1852 0.71 -1.4
528,468 + GFF1852 0.71 +0.7
528,468 + GFF1852 0.71 +0.3
528,468 + GFF1852 0.71 +2.0
528,468 + GFF1852 0.71 +0.6
528,468 + GFF1852 0.71 -0.8
528,468 + GFF1852 0.71 -0.2
528,468 + GFF1852 0.71 -1.4
528,469 - GFF1852 0.71 -1.3
528,469 - GFF1852 0.71 +2.1
528,469 - GFF1852 0.71 -0.0
528,469 - GFF1852 0.71 +0.8
528,469 - GFF1852 0.71 -2.2
528,469 - GFF1852 0.71 -2.3
528,469 - GFF1852 0.71 +0.1
528,469 - GFF1852 0.71 -0.4
528,588 + GFF1852 0.84 +0.8
528,588 + GFF1852 0.84 +3.2
528,588 + GFF1852 0.84 +0.0
528,588 + GFF1852 0.84 -0.5
528,589 - GFF1852 0.84 -1.7
528,589 - GFF1852 0.84 +1.0
528,589 - GFF1852 0.84 -0.9
528,589 - GFF1852 0.84 -0.8
528,589 - GFF1852 0.84 +1.0
528,589 - GFF1852 0.84 -2.5
528,589 - GFF1852 0.84 -2.1
528,589 - GFF1852 0.84 -2.1
528,625 + GFF1852 0.88 -0.4
528,625 + GFF1852 0.88 -0.5
528,626 - GFF1852 0.88 +0.7
528,626 - GFF1852 0.88 +0.6
528,626 - GFF1852 0.88 +1.6
528,703 - -0.7
528,738 + -1.1
528,748 + +1.3
528,748 + -3.8
528,748 + -2.0
528,748 + -2.4
528,749 - +0.5
528,774 + +2.1
528,774 + -0.4
528,775 - -1.1
528,775 - -0.4
528,968 + GFF1853 0.19 -0.5
528,968 + GFF1853 0.19 +0.1
528,968 + GFF1853 0.19 -1.7
528,968 + GFF1853 0.19 -0.6
529,085 + GFF1853 0.36 +0.7
529,085 + GFF1853 0.36 -1.1
529,085 + GFF1853 0.36 -1.9
529,085 + GFF1853 0.36 -3.1
529,085 + GFF1853 0.36 -0.2
529,086 - GFF1853 0.37 -0.3
529,086 - GFF1853 0.37 +0.1
529,086 - GFF1853 0.37 -1.8
529,086 - GFF1853 0.37 -0.6
529,139 + GFF1853 0.45 -1.6
529,140 - GFF1853 0.45 +0.8
529,140 - GFF1853 0.45 -1.9
529,140 - GFF1853 0.45 -0.9
529,184 + GFF1853 0.51 +1.2
529,184 + GFF1853 0.51 -0.0
529,184 + GFF1853 0.51 +1.4
529,184 + GFF1853 0.51 -1.3
529,185 - GFF1853 0.52 -0.5
529,185 - GFF1853 0.52 -2.6
529,185 - GFF1853 0.52 +1.7
529,185 - GFF1853 0.52 +0.0
529,259 + GFF1853 0.63 -0.8
529,259 + GFF1853 0.63 +0.4
529,314 - GFF1853 0.71 -1.3
529,325 + GFF1853 0.73 -0.5
529,334 + GFF1853 0.74 -1.1
529,535 + +0.8
529,536 - +0.4
529,761 + GFF1854 0.50 -1.9
529,762 - GFF1854 0.50 +0.1
529,762 - GFF1854 0.50 -0.4
529,818 + GFF1854 0.62 +1.0
529,818 + GFF1854 0.62 -0.0
529,818 + GFF1854 0.62 +0.2
529,818 + GFF1854 0.62 +0.3
529,818 + GFF1854 0.62 +0.4
529,818 + GFF1854 0.62 -2.7
529,818 + GFF1854 0.62 -0.8
529,818 + GFF1854 0.62 -0.6
529,818 + GFF1854 0.62 +0.6
529,818 + GFF1854 0.62 +2.0
529,819 - GFF1854 0.62 +1.1
529,819 - GFF1854 0.62 -0.3
529,819 - GFF1854 0.62 -1.4
529,819 - GFF1854 0.62 -0.9
529,819 - GFF1854 0.62 -3.2
529,819 - GFF1854 0.62 -0.2
529,819 - GFF1854 0.62 +0.8
529,821 + GFF1854 0.62 -0.9
529,821 + GFF1854 0.62 +1.4
529,821 + GFF1854 0.62 -1.3
529,821 + GFF1854 0.62 -2.6
529,821 + GFF1854 0.62 -0.7
529,821 + GFF1854 0.62 -0.2
529,821 + GFF1854 0.62 -2.2
529,821 + GFF1854 0.62 -0.4
529,822 - GFF1854 0.63 -2.1
529,822 - GFF1854 0.63 -0.7
529,822 - GFF1854 0.63 -2.1
529,822 - GFF1854 0.63 +0.6
529,822 - GFF1854 0.63 -1.9
529,822 - GFF1854 0.63 +1.9
529,822 - GFF1854 0.63 +1.0
529,822 - GFF1854 0.63 -3.1
529,822 - GFF1854 0.63 +1.7
529,822 - GFF1854 0.63 -0.2
529,822 - GFF1854 0.63 +1.3
529,822 - GFF1854 0.63 -1.2
529,922 - GFF1854 0.83 +0.9
530,001 + -1.8
530,085 + +0.9
530,086 - -4.2
530,145 - -1.2
530,145 - +0.5
530,158 + -0.9
530,158 + -1.2
530,158 + -1.1
530,158 + -2.1
530,158 + -0.7
530,158 + -1.7
530,159 - -0.1
530,159 - +0.2
530,230 + -0.5
530,230 + -1.2
530,230 + -0.5
530,230 + +1.5
530,230 + -0.5
530,230 + +0.1
530,230 + +0.7
530,230 + +1.3
530,230 + -0.7
530,230 + -2.5
530,230 + +1.3
530,230 + -2.9
530,230 + +0.1
530,230 + -0.4
530,230 + +0.5
530,230 + +1.9
530,231 - +0.9
530,231 - -2.1
530,231 - -0.9
530,231 - +1.5
530,231 - -3.1
530,231 - +1.6
530,231 - -0.1
530,231 - +0.0
530,231 - -0.1
530,231 - -1.8
530,231 - -0.8
530,231 - -1.7
530,305 + GFF1855 0.12 +0.2
530,305 + GFF1855 0.12 +2.2
530,305 + GFF1855 0.12 -1.1
530,305 + GFF1855 0.12 -0.9
530,305 + GFF1855 0.12 +1.0
530,305 + GFF1855 0.12 -2.5
530,306 - GFF1855 0.12 -1.8
530,306 - GFF1855 0.12 -0.8
530,306 - GFF1855 0.12 -1.1
530,306 - GFF1855 0.12 -0.6
530,306 - GFF1855 0.12 -1.1
530,306 - GFF1855 0.12 -1.3
530,306 - GFF1855 0.12 -2.3
530,306 - GFF1855 0.12 -1.7
530,306 - GFF1855 0.12 -3.8
530,306 - GFF1855 0.12 +1.4
530,437 + GFF1855 0.24 -0.6
530,437 + GFF1855 0.24 -1.3
530,437 + GFF1855 0.24 +0.3
530,437 + GFF1855 0.24 +0.0
530,438 - GFF1855 0.24 -3.3
530,438 - GFF1855 0.24 -0.7

Or see this region's nucleotide sequence