Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1821 and GFF1822 are separated by 162 nucleotides GFF1822 and GFF1823 are separated by 15 nucleotides GFF1823 and GFF1824 are separated by 37 nucleotides
GFF1821 - D-glycerate 2-kinase (EC 2.7.1.165), at 484,747 to 486,087
GFF1821
GFF1822 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26), at 486,250 to 487,692
GFF1822
GFF1823 - Mg(2+)-transport-ATPase-associated protein MgtC, at 487,708 to 488,424
GFF1823
GFF1824 - hypothetical protein, at 488,462 to 489,037
GFF1824
Position (kb) 486
487
488 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 485.453 kb on - strand, within GFF1821 at 485.453 kb on - strand, within GFF1821 at 485.977 kb on + strand at 485.977 kb on + strand at 485.977 kb on + strand at 485.977 kb on + strand at 485.977 kb on + strand at 485.978 kb on - strand at 485.978 kb on - strand at 485.978 kb on - strand at 485.978 kb on - strand at 485.978 kb on - strand at 485.978 kb on - strand at 485.998 kb on + strand at 485.998 kb on + strand at 485.998 kb on + strand at 485.998 kb on + strand at 485.998 kb on + strand at 485.999 kb on - strand at 485.999 kb on - strand at 485.999 kb on - strand at 485.999 kb on - strand at 486.004 kb on + strand at 486.004 kb on + strand at 486.004 kb on + strand at 486.005 kb on - strand at 486.005 kb on - strand at 486.086 kb on - strand at 486.133 kb on - strand at 486.137 kb on + strand at 486.137 kb on + strand at 486.137 kb on + strand at 486.138 kb on - strand at 486.138 kb on - strand at 486.138 kb on - strand at 486.138 kb on - strand at 486.262 kb on + strand at 486.262 kb on + strand at 486.262 kb on + strand at 486.262 kb on + strand at 486.262 kb on + strand at 486.262 kb on + strand at 486.262 kb on + strand at 486.263 kb on - strand at 486.263 kb on - strand at 486.619 kb on + strand, within GFF1822 at 486.896 kb on - strand, within GFF1822 at 486.896 kb on - strand, within GFF1822 at 486.896 kb on - strand, within GFF1822 at 486.896 kb on - strand, within GFF1822 at 487.174 kb on + strand, within GFF1822 at 487.174 kb on + strand, within GFF1822 at 487.174 kb on + strand, within GFF1822 at 487.175 kb on - strand, within GFF1822 at 487.175 kb on - strand, within GFF1822 at 487.175 kb on - strand, within GFF1822 at 487.618 kb on + strand at 487.618 kb on + strand at 487.654 kb on + strand at 487.812 kb on - strand, within GFF1823 at 487.878 kb on - strand, within GFF1823 at 487.958 kb on + strand, within GFF1823 at 487.958 kb on + strand, within GFF1823 at 487.958 kb on + strand, within GFF1823 at 487.959 kb on - strand, within GFF1823 at 487.959 kb on - strand, within GFF1823 at 487.959 kb on - strand, within GFF1823 at 487.959 kb on - strand, within GFF1823 at 487.959 kb on - strand, within GFF1823 at 488.028 kb on + strand, within GFF1823 at 488.029 kb on - strand, within GFF1823 at 488.029 kb on - strand, within GFF1823 at 488.029 kb on - strand, within GFF1823 at 488.029 kb on - strand, within GFF1823 at 488.029 kb on - strand, within GFF1823 at 488.130 kb on + strand, within GFF1823 at 488.131 kb on - strand, within GFF1823 at 488.204 kb on + strand, within GFF1823 at 488.204 kb on + strand, within GFF1823 at 488.205 kb on - strand, within GFF1823 at 488.205 kb on - strand, within GFF1823 at 488.205 kb on - strand, within GFF1823 at 488.205 kb on - strand, within GFF1823 at 488.205 kb on - strand, within GFF1823 at 488.205 kb on - strand, within GFF1823 at 488.447 kb on + strand at 488.447 kb on + strand at 488.448 kb on - strand at 488.565 kb on + strand, within GFF1824 at 488.566 kb on - strand, within GFF1824 at 488.637 kb on + strand, within GFF1824 at 488.637 kb on + strand, within GFF1824 at 488.637 kb on + strand, within GFF1824 at 488.638 kb on - strand, within GFF1824 at 488.638 kb on - strand, within GFF1824
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 485,453 - GFF1821 0.53 -1.1 485,453 - GFF1821 0.53 -1.5 485,977 + -1.8 485,977 + +0.6 485,977 + -1.2 485,977 + -2.3 485,977 + -1.6 485,978 - +1.5 485,978 - -1.3 485,978 - -0.9 485,978 - -1.9 485,978 - -0.4 485,978 - -1.9 485,998 + -1.0 485,998 + -2.7 485,998 + +0.2 485,998 + +1.0 485,998 + +0.3 485,999 - -1.4 485,999 - -4.0 485,999 - -0.7 485,999 - +0.1 486,004 + -0.8 486,004 + -1.7 486,004 + -1.9 486,005 - +0.1 486,005 - -0.1 486,086 - +0.2 486,133 - -2.6 486,137 + -1.5 486,137 + -1.5 486,137 + +0.3 486,138 - +0.5 486,138 - -1.6 486,138 - +0.3 486,138 - -2.4 486,262 + +2.6 486,262 + -0.9 486,262 + +0.6 486,262 + -0.2 486,262 + -1.5 486,262 + +1.0 486,262 + -1.0 486,263 - -1.1 486,263 - +1.6 486,619 + GFF1822 0.26 -0.5 486,896 - GFF1822 0.45 -1.9 486,896 - GFF1822 0.45 -0.4 486,896 - GFF1822 0.45 -2.7 486,896 - GFF1822 0.45 -1.7 487,174 + GFF1822 0.64 -1.5 487,174 + GFF1822 0.64 +1.0 487,174 + GFF1822 0.64 -0.4 487,175 - GFF1822 0.64 -1.6 487,175 - GFF1822 0.64 -1.2 487,175 - GFF1822 0.64 -1.8 487,618 + +0.2 487,618 + -0.4 487,654 + -1.5 487,812 - GFF1823 0.15 -1.4 487,878 - GFF1823 0.24 +0.2 487,958 + GFF1823 0.35 +0.3 487,958 + GFF1823 0.35 +0.6 487,958 + GFF1823 0.35 -0.7 487,959 - GFF1823 0.35 -2.8 487,959 - GFF1823 0.35 -0.5 487,959 - GFF1823 0.35 -2.2 487,959 - GFF1823 0.35 +0.9 487,959 - GFF1823 0.35 +0.1 488,028 + GFF1823 0.45 +0.4 488,029 - GFF1823 0.45 -3.6 488,029 - GFF1823 0.45 -1.1 488,029 - GFF1823 0.45 -1.6 488,029 - GFF1823 0.45 -0.9 488,029 - GFF1823 0.45 +1.1 488,130 + GFF1823 0.59 -1.9 488,131 - GFF1823 0.59 -1.6 488,204 + GFF1823 0.69 -0.7 488,204 + GFF1823 0.69 +0.4 488,205 - GFF1823 0.69 -1.8 488,205 - GFF1823 0.69 -1.3 488,205 - GFF1823 0.69 -1.1 488,205 - GFF1823 0.69 +0.3 488,205 - GFF1823 0.69 -2.7 488,205 - GFF1823 0.69 -2.5 488,447 + +0.3 488,447 + -0.2 488,448 - +0.6 488,565 + GFF1824 0.18 +0.8 488,566 - GFF1824 0.18 +0.1 488,637 + GFF1824 0.30 +0.5 488,637 + GFF1824 0.30 -0.2 488,637 + GFF1824 0.30 -1.1 488,638 - GFF1824 0.31 -3.6 488,638 - GFF1824 0.31 -1.9
Or see this region's nucleotide sequence