Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1783 and GFF1784 are separated by 10 nucleotides GFF1784 and GFF1785 are separated by 112 nucleotides GFF1785 and GFF1786 overlap by 4 nucleotides
GFF1783 - Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO, at 444,256 to 445,152
GFF1783
GFF1784 - no description, at 445,163 to 445,852
GFF1784
GFF1785 - Two-component transcriptional response regulator, OmpR family, at 445,965 to 446,654
GFF1785
GFF1786 - hypothetical protein, at 446,651 to 448,003
GFF1786
Position (kb) 445
446 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 444.221 kb on + strand at 444.221 kb on + strand at 444.222 kb on - strand at 444.222 kb on - strand at 444.226 kb on + strand at 444.226 kb on + strand at 444.298 kb on + strand at 444.298 kb on + strand at 444.298 kb on + strand at 444.298 kb on + strand at 444.298 kb on + strand at 444.299 kb on - strand at 444.299 kb on - strand at 444.299 kb on - strand at 444.388 kb on + strand, within GFF1783 at 444.388 kb on + strand, within GFF1783 at 444.388 kb on + strand, within GFF1783 at 444.388 kb on + strand, within GFF1783 at 444.389 kb on - strand, within GFF1783 at 444.389 kb on - strand, within GFF1783 at 444.419 kb on - strand, within GFF1783 at 444.584 kb on - strand, within GFF1783 at 444.584 kb on - strand, within GFF1783 at 444.595 kb on + strand, within GFF1783 at 444.749 kb on - strand, within GFF1783 at 444.787 kb on + strand, within GFF1783 at 444.788 kb on - strand, within GFF1783 at 444.788 kb on - strand, within GFF1783 at 444.928 kb on + strand, within GFF1783 at 444.929 kb on - strand, within GFF1783 at 445.039 kb on + strand, within GFF1783 at 445.039 kb on + strand, within GFF1783 at 445.039 kb on + strand, within GFF1783 at 445.039 kb on + strand, within GFF1783 at 445.039 kb on + strand, within GFF1783 at 445.039 kb on + strand, within GFF1783 at 445.040 kb on - strand, within GFF1783 at 445.040 kb on - strand, within GFF1783 at 445.040 kb on - strand, within GFF1783 at 445.045 kb on + strand, within GFF1783 at 445.046 kb on - strand, within GFF1783 at 445.046 kb on - strand, within GFF1783 at 445.046 kb on - strand, within GFF1783 at 445.046 kb on - strand, within GFF1783 at 445.046 kb on - strand, within GFF1783 at 445.096 kb on + strand at 445.096 kb on + strand at 445.096 kb on + strand at 445.096 kb on + strand at 445.097 kb on - strand at 445.097 kb on - strand at 445.097 kb on - strand at 445.097 kb on - strand at 445.099 kb on + strand at 445.099 kb on + strand at 445.099 kb on + strand at 445.099 kb on + strand at 445.100 kb on - strand at 445.100 kb on - strand at 445.150 kb on + strand at 445.150 kb on + strand at 445.150 kb on + strand at 445.281 kb on + strand, within GFF1784 at 445.282 kb on - strand, within GFF1784 at 445.599 kb on + strand, within GFF1784 at 445.599 kb on + strand, within GFF1784 at 445.599 kb on + strand, within GFF1784 at 445.599 kb on + strand, within GFF1784 at 445.600 kb on - strand, within GFF1784 at 445.617 kb on + strand, within GFF1784 at 445.618 kb on - strand, within GFF1784 at 445.618 kb on - strand, within GFF1784 at 445.716 kb on + strand, within GFF1784 at 445.717 kb on - strand, within GFF1784 at 445.803 kb on + strand at 445.804 kb on - strand at 445.867 kb on + strand at 445.868 kb on - strand at 445.868 kb on - strand at 445.868 kb on - strand at 445.868 kb on - strand at 445.917 kb on + strand at 446.256 kb on + strand, within GFF1785 at 446.617 kb on - strand at 446.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 444,221 + +1.5 444,221 + -0.2 444,222 - -0.5 444,222 - -0.4 444,226 + -0.8 444,226 + -0.7 444,298 + -0.0 444,298 + -1.4 444,298 + -0.7 444,298 + +0.1 444,298 + -1.1 444,299 - +0.5 444,299 - +0.2 444,299 - +2.0 444,388 + GFF1783 0.15 -0.1 444,388 + GFF1783 0.15 +1.7 444,388 + GFF1783 0.15 -1.6 444,388 + GFF1783 0.15 +1.0 444,389 - GFF1783 0.15 +0.2 444,389 - GFF1783 0.15 +1.6 444,419 - GFF1783 0.18 -0.2 444,584 - GFF1783 0.37 +1.1 444,584 - GFF1783 0.37 -0.5 444,595 + GFF1783 0.38 -0.9 444,749 - GFF1783 0.55 +0.2 444,787 + GFF1783 0.59 -0.4 444,788 - GFF1783 0.59 -1.7 444,788 - GFF1783 0.59 -0.0 444,928 + GFF1783 0.75 -1.6 444,929 - GFF1783 0.75 +0.6 445,039 + GFF1783 0.87 -2.9 445,039 + GFF1783 0.87 +1.0 445,039 + GFF1783 0.87 +0.5 445,039 + GFF1783 0.87 -0.3 445,039 + GFF1783 0.87 +0.2 445,039 + GFF1783 0.87 -0.7 445,040 - GFF1783 0.87 +0.0 445,040 - GFF1783 0.87 -2.8 445,040 - GFF1783 0.87 -2.7 445,045 + GFF1783 0.88 -1.0 445,046 - GFF1783 0.88 +0.8 445,046 - GFF1783 0.88 -2.0 445,046 - GFF1783 0.88 -1.9 445,046 - GFF1783 0.88 -2.8 445,046 - GFF1783 0.88 +1.1 445,096 + -2.6 445,096 + -1.8 445,096 + -0.5 445,096 + -1.0 445,097 - +0.9 445,097 - -0.1 445,097 - +0.9 445,097 - +0.1 445,099 + +1.1 445,099 + +0.1 445,099 + -0.8 445,099 + +1.2 445,100 - -4.2 445,100 - -0.7 445,150 + -0.5 445,150 + -0.8 445,150 + -1.2 445,281 + GFF1784 0.17 +0.1 445,282 - GFF1784 0.17 -0.4 445,599 + GFF1784 0.63 -2.6 445,599 + GFF1784 0.63 -2.7 445,599 + GFF1784 0.63 -0.2 445,599 + GFF1784 0.63 -0.0 445,600 - GFF1784 0.63 -1.3 445,617 + GFF1784 0.66 -1.1 445,618 - GFF1784 0.66 +0.3 445,618 - GFF1784 0.66 +1.3 445,716 + GFF1784 0.80 -0.5 445,717 - GFF1784 0.80 -1.0 445,803 + -2.2 445,804 - -0.6 445,867 + -1.6 445,868 - -1.7 445,868 - -1.8 445,868 - -2.6 445,868 - -1.1 445,917 + -0.5 446,256 + GFF1785 0.42 -1.1 446,617 - -0.3 446,617 - -1.6
Or see this region's nucleotide sequence