Strain Fitness in Variovorax sp. SCN45 around GFF1655

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1654 and GFF1655 are separated by 267 nucleotidesGFF1655 and GFF1656 overlap by 4 nucleotides GFF1654 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 293,763 to 295,457 GFF1654 GFF1655 - no description, at 295,725 to 296,444 GFF1655 GFF1656 - hypothetical protein, at 296,441 to 298,957 GFF1656 Position (kb) 295 296 297Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 295.114 kb on + strand, within GFF1654at 295.114 kb on + strand, within GFF1654at 295.154 kb on - strand, within GFF1654at 295.154 kb on - strand, within GFF1654at 295.154 kb on - strand, within GFF1654at 295.174 kb on + strand, within GFF1654at 295.174 kb on + strand, within GFF1654at 295.174 kb on + strand, within GFF1654at 295.175 kb on - strand, within GFF1654at 295.175 kb on - strand, within GFF1654at 295.175 kb on - strand, within GFF1654at 295.175 kb on - strand, within GFF1654at 295.175 kb on - strand, within GFF1654at 295.496 kb on + strandat 295.532 kb on - strandat 295.532 kb on - strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.564 kb on + strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.565 kb on - strandat 295.616 kb on + strandat 295.617 kb on - strandat 295.636 kb on + strandat 295.636 kb on + strandat 295.636 kb on + strandat 295.636 kb on + strandat 295.637 kb on - strandat 295.637 kb on - strandat 295.637 kb on - strandat 295.637 kb on - strandat 296.073 kb on + strand, within GFF1655at 296.145 kb on + strand, within GFF1655at 296.146 kb on - strand, within GFF1655at 296.146 kb on - strand, within GFF1655at 296.203 kb on - strand, within GFF1655at 296.203 kb on - strand, within GFF1655at 296.256 kb on + strand, within GFF1655at 296.256 kb on + strand, within GFF1655at 296.257 kb on - strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.259 kb on + strand, within GFF1655at 296.260 kb on - strand, within GFF1655at 296.260 kb on - strand, within GFF1655at 296.260 kb on - strand, within GFF1655at 296.334 kb on + strand, within GFF1655at 296.334 kb on + strand, within GFF1655at 296.334 kb on + strand, within GFF1655at 296.334 kb on + strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.335 kb on - strand, within GFF1655at 296.595 kb on - strandat 296.687 kb on + strandat 296.687 kb on + strandat 296.687 kb on + strandat 296.688 kb on - strandat 296.688 kb on - strandat 296.688 kb on - strandat 296.777 kb on + strand, within GFF1656at 296.777 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.804 kb on + strand, within GFF1656at 296.805 kb on - strand, within GFF1656at 296.805 kb on - strand, within GFF1656at 296.805 kb on - strand, within GFF1656at 296.805 kb on - strand, within GFF1656at 296.805 kb on - strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.044 kb on + strand, within GFF1656at 297.045 kb on - strand, within GFF1656at 297.045 kb on - strand, within GFF1656at 297.045 kb on - strand, within GFF1656at 297.045 kb on - strand, within GFF1656at 297.045 kb on - strand, within GFF1656at 297.045 kb on - strand, within GFF1656at 297.075 kb on - strand, within GFF1656at 297.075 kb on - strand, within GFF1656at 297.113 kb on + strand, within GFF1656at 297.114 kb on - strand, within GFF1656at 297.114 kb on - strand, within GFF1656at 297.114 kb on - strand, within GFF1656at 297.114 kb on - strand, within GFF1656at 297.114 kb on - strand, within GFF1656at 297.119 kb on + strand, within GFF1656at 297.119 kb on + strand, within GFF1656at 297.119 kb on + strand, within GFF1656at 297.120 kb on - strand, within GFF1656at 297.122 kb on + strand, within GFF1656at 297.122 kb on + strand, within GFF1656at 297.122 kb on + strand, within GFF1656at 297.122 kb on + strand, within GFF1656at 297.123 kb on - strand, within GFF1656at 297.123 kb on - strand, within GFF1656at 297.123 kb on - strand, within GFF1656at 297.164 kb on + strand, within GFF1656at 297.164 kb on + strand, within GFF1656at 297.165 kb on - strand, within GFF1656at 297.165 kb on - strand, within GFF1656at 297.185 kb on + strand, within GFF1656at 297.185 kb on + strand, within GFF1656

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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295,114 + GFF1654 0.80 +0.7
295,114 + GFF1654 0.80 -0.5
295,154 - GFF1654 0.82 +0.7
295,154 - GFF1654 0.82 -0.8
295,154 - GFF1654 0.82 -1.0
295,174 + GFF1654 0.83 -0.4
295,174 + GFF1654 0.83 +0.5
295,174 + GFF1654 0.83 +0.8
295,175 - GFF1654 0.83 -1.0
295,175 - GFF1654 0.83 +1.1
295,175 - GFF1654 0.83 +2.1
295,175 - GFF1654 0.83 -1.9
295,175 - GFF1654 0.83 -2.5
295,496 + -3.4
295,532 - -2.3
295,532 - +2.9
295,564 + +0.1
295,564 + -2.0
295,564 + +0.3
295,564 + -0.7
295,564 + -1.5
295,564 + -1.9
295,564 + +1.4
295,564 + -2.5
295,565 - -1.5
295,565 - +1.2
295,565 - -2.3
295,565 - -3.4
295,565 - +1.1
295,565 - +2.9
295,565 - +1.3
295,565 - -0.3
295,565 - +0.4
295,565 - -0.4
295,565 - -2.1
295,565 - -1.7
295,565 - -1.0
295,565 - +1.5
295,565 - +1.6
295,565 - +1.5
295,616 + -4.2
295,617 - +2.1
295,636 + -1.7
295,636 + +1.1
295,636 + -1.3
295,636 + +0.5
295,637 - +0.1
295,637 - -0.7
295,637 - +0.1
295,637 - -0.3
296,073 + GFF1655 0.48 -0.9
296,145 + GFF1655 0.58 -1.1
296,146 - GFF1655 0.58 +2.7
296,146 - GFF1655 0.58 +0.8
296,203 - GFF1655 0.66 -2.1
296,203 - GFF1655 0.66 +0.3
296,256 + GFF1655 0.74 +0.8
296,256 + GFF1655 0.74 +2.2
296,257 - GFF1655 0.74 -3.2
296,259 + GFF1655 0.74 +0.9
296,259 + GFF1655 0.74 -0.1
296,259 + GFF1655 0.74 -0.9
296,259 + GFF1655 0.74 -0.6
296,259 + GFF1655 0.74 -0.1
296,259 + GFF1655 0.74 -0.7
296,260 - GFF1655 0.74 -0.5
296,260 - GFF1655 0.74 -0.2
296,260 - GFF1655 0.74 +0.5
296,334 + GFF1655 0.85 -0.9
296,334 + GFF1655 0.85 +0.0
296,334 + GFF1655 0.85 -0.9
296,334 + GFF1655 0.85 +1.0
296,335 - GFF1655 0.85 -0.7
296,335 - GFF1655 0.85 +2.1
296,335 - GFF1655 0.85 -0.1
296,335 - GFF1655 0.85 +0.5
296,335 - GFF1655 0.85 +0.2
296,595 - -3.6
296,687 + +0.4
296,687 + -0.5
296,687 + +1.5
296,688 - +0.1
296,688 - +1.9
296,688 - -0.5
296,777 + GFF1656 0.13 +1.0
296,777 + GFF1656 0.13 +0.1
296,804 + GFF1656 0.14 +0.6
296,804 + GFF1656 0.14 -0.1
296,804 + GFF1656 0.14 -0.3
296,804 + GFF1656 0.14 -1.4
296,804 + GFF1656 0.14 -1.1
296,804 + GFF1656 0.14 -3.2
296,804 + GFF1656 0.14 -0.5
296,805 - GFF1656 0.14 +2.4
296,805 - GFF1656 0.14 -1.1
296,805 - GFF1656 0.14 +0.8
296,805 - GFF1656 0.14 +0.0
296,805 - GFF1656 0.14 +1.1
297,044 + GFF1656 0.24 +0.4
297,044 + GFF1656 0.24 +1.3
297,044 + GFF1656 0.24 -0.3
297,044 + GFF1656 0.24 +1.2
297,044 + GFF1656 0.24 -1.1
297,044 + GFF1656 0.24 -0.1
297,044 + GFF1656 0.24 -1.9
297,045 - GFF1656 0.24 -1.6
297,045 - GFF1656 0.24 +1.6
297,045 - GFF1656 0.24 +1.3
297,045 - GFF1656 0.24 -0.3
297,045 - GFF1656 0.24 +2.0
297,045 - GFF1656 0.24 -3.0
297,075 - GFF1656 0.25 -1.4
297,075 - GFF1656 0.25 -0.7
297,113 + GFF1656 0.27 -2.4
297,114 - GFF1656 0.27 +0.1
297,114 - GFF1656 0.27 -1.4
297,114 - GFF1656 0.27 -0.8
297,114 - GFF1656 0.27 +1.6
297,114 - GFF1656 0.27 +0.8
297,119 + GFF1656 0.27 -0.5
297,119 + GFF1656 0.27 -2.0
297,119 + GFF1656 0.27 -1.6
297,120 - GFF1656 0.27 -3.1
297,122 + GFF1656 0.27 -1.1
297,122 + GFF1656 0.27 +0.3
297,122 + GFF1656 0.27 +0.1
297,122 + GFF1656 0.27 +2.5
297,123 - GFF1656 0.27 -0.3
297,123 - GFF1656 0.27 -0.2
297,123 - GFF1656 0.27 -0.5
297,164 + GFF1656 0.29 -1.2
297,164 + GFF1656 0.29 -0.8
297,165 - GFF1656 0.29 +0.7
297,165 - GFF1656 0.29 -3.5
297,185 + GFF1656 0.30 -0.8
297,185 + GFF1656 0.30 -1.5

Or see this region's nucleotide sequence