Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1625 and GFF1626 are separated by 71 nucleotides GFF1626 and GFF1627 are separated by 75 nucleotides GFF1627 and GFF1628 are separated by 41 nucleotides GFF1628 and GFF1629 are separated by 177 nucleotides
GFF1625 - Transcriptional regulator, LysR family, at 226,032 to 226,898
GFF1625
GFF1626 - hypothetical protein, at 226,970 to 227,512
GFF1626
GFF1627 - ABC-type siderophore export system, fused ATPase and permease components, at 227,588 to 229,267
GFF1627
GFF1628 - no description, at 229,309 to 229,548
GFF1628
GFF1629 - Ferric reductase (1.6.99.14), at 229,726 to 230,478
GFF1629
Position (kb) 227
228
229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 226.670 kb on - strand, within GFF1625 at 226.825 kb on - strand at 226.971 kb on + strand at 226.971 kb on + strand at 226.972 kb on - strand at 227.745 kb on + strand at 227.746 kb on - strand at 227.820 kb on + strand, within GFF1627 at 227.820 kb on + strand, within GFF1627 at 227.869 kb on - strand, within GFF1627 at 227.928 kb on + strand, within GFF1627 at 227.997 kb on + strand, within GFF1627 at 227.997 kb on + strand, within GFF1627 at 227.998 kb on - strand, within GFF1627 at 228.096 kb on - strand, within GFF1627 at 228.096 kb on - strand, within GFF1627 at 228.099 kb on + strand, within GFF1627 at 228.099 kb on + strand, within GFF1627 at 228.099 kb on + strand, within GFF1627 at 228.099 kb on + strand, within GFF1627 at 228.099 kb on + strand, within GFF1627 at 228.100 kb on - strand, within GFF1627 at 228.613 kb on - strand, within GFF1627 at 228.613 kb on - strand, within GFF1627 at 229.274 kb on + strand at 229.275 kb on - strand at 229.939 kb on + strand, within GFF1629 at 230.062 kb on - strand, within GFF1629
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 226,670 - GFF1625 0.74 -1.0 226,825 - -3.5 226,971 + +0.5 226,971 + -1.1 226,972 - -1.8 227,745 + +0.1 227,746 - +0.1 227,820 + GFF1627 0.14 -3.0 227,820 + GFF1627 0.14 -0.4 227,869 - GFF1627 0.17 -1.3 227,928 + GFF1627 0.20 -1.0 227,997 + GFF1627 0.24 +1.0 227,997 + GFF1627 0.24 -1.1 227,998 - GFF1627 0.24 -3.4 228,096 - GFF1627 0.30 +1.0 228,096 - GFF1627 0.30 -0.8 228,099 + GFF1627 0.30 -1.0 228,099 + GFF1627 0.30 -0.3 228,099 + GFF1627 0.30 -1.1 228,099 + GFF1627 0.30 -1.1 228,099 + GFF1627 0.30 -0.4 228,100 - GFF1627 0.30 -3.5 228,613 - GFF1627 0.61 -0.5 228,613 - GFF1627 0.61 -1.5 229,274 + -2.8 229,275 - +0.0 229,939 + GFF1629 0.28 +1.9 230,062 - GFF1629 0.45 -1.2
Or see this region's nucleotide sequence