Strain Fitness in Variovorax sp. SCN45 around GFF1524

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1523 and GFF1524 overlap by 4 nucleotidesGFF1524 and GFF1525 are separated by 146 nucleotidesGFF1525 and GFF1526 are separated by 82 nucleotides GFF1523 - KEGG: transmembrane sensor, at 119,482 to 120,495 GFF1523 GFF1524 - FIG006045: Sigma factor, ECF subfamily, at 120,492 to 121,007 GFF1524 GFF1525 - RNA polymerase ECF-type sigma factor, at 121,154 to 121,744 GFF1525 GFF1526 - putative transmembrane sensor, at 121,827 to 122,996 GFF1526 Position (kb) 120 121 122Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 119.934 kb on - strand, within GFF1523at 119.934 kb on - strand, within GFF1523at 119.934 kb on - strand, within GFF1523at 120.517 kb on + strandat 120.517 kb on + strandat 120.517 kb on + strandat 120.518 kb on - strandat 120.518 kb on - strandat 120.518 kb on - strandat 120.518 kb on - strandat 120.518 kb on - strandat 120.544 kb on + strand, within GFF1524at 120.545 kb on - strand, within GFF1524at 120.545 kb on - strand, within GFF1524at 120.754 kb on + strand, within GFF1524at 120.755 kb on - strand, within GFF1524at 120.961 kb on + strandat 120.961 kb on + strandat 120.962 kb on - strandat 121.038 kb on + strandat 121.038 kb on + strandat 121.077 kb on + strandat 121.077 kb on + strandat 121.077 kb on + strandat 121.077 kb on + strandat 121.077 kb on + strandat 121.078 kb on - strandat 121.078 kb on - strandat 121.078 kb on - strandat 121.078 kb on - strandat 121.078 kb on - strandat 121.078 kb on - strandat 121.166 kb on + strandat 121.166 kb on + strandat 121.244 kb on + strand, within GFF1525at 121.244 kb on + strand, within GFF1525at 121.244 kb on + strand, within GFF1525at 121.244 kb on + strand, within GFF1525at 121.244 kb on + strand, within GFF1525at 121.244 kb on + strand, within GFF1525at 121.244 kb on + strand, within GFF1525at 121.244 kb on + strand, within GFF1525at 121.244 kb on + strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.245 kb on - strand, within GFF1525at 121.308 kb on - strand, within GFF1525at 121.528 kb on + strand, within GFF1525at 121.528 kb on + strand, within GFF1525at 121.528 kb on + strand, within GFF1525at 121.528 kb on + strand, within GFF1525at 121.528 kb on + strand, within GFF1525at 121.529 kb on - strand, within GFF1525at 121.529 kb on - strand, within GFF1525at 121.529 kb on - strand, within GFF1525at 121.757 kb on - strandat 121.775 kb on + strandat 121.977 kb on + strand, within GFF1526at 121.978 kb on - strand, within GFF1526

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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119,934 - GFF1523 0.45 +0.7
119,934 - GFF1523 0.45 -1.0
119,934 - GFF1523 0.45 -3.1
120,517 + -2.4
120,517 + +0.2
120,517 + -2.7
120,518 - -2.2
120,518 - -0.6
120,518 - -1.9
120,518 - -0.8
120,518 - +1.3
120,544 + GFF1524 0.10 -2.1
120,545 - GFF1524 0.10 +0.4
120,545 - GFF1524 0.10 -0.6
120,754 + GFF1524 0.51 -1.5
120,755 - GFF1524 0.51 -0.3
120,961 + +0.9
120,961 + -0.8
120,962 - +0.3
121,038 + +0.1
121,038 + +0.6
121,077 + -0.9
121,077 + +0.6
121,077 + -0.2
121,077 + +1.0
121,077 + -0.6
121,078 - -2.3
121,078 - -2.1
121,078 - +0.6
121,078 - -1.0
121,078 - -3.5
121,078 - -3.2
121,166 + +0.5
121,166 + -0.0
121,244 + GFF1525 0.15 +0.7
121,244 + GFF1525 0.15 -3.7
121,244 + GFF1525 0.15 +1.5
121,244 + GFF1525 0.15 -2.5
121,244 + GFF1525 0.15 -1.8
121,244 + GFF1525 0.15 +1.1
121,244 + GFF1525 0.15 -0.4
121,244 + GFF1525 0.15 -3.3
121,244 + GFF1525 0.15 -1.1
121,245 - GFF1525 0.15 -2.7
121,245 - GFF1525 0.15 +0.1
121,245 - GFF1525 0.15 -0.5
121,245 - GFF1525 0.15 -0.8
121,245 - GFF1525 0.15 +0.8
121,245 - GFF1525 0.15 -1.0
121,245 - GFF1525 0.15 +0.2
121,245 - GFF1525 0.15 +0.2
121,245 - GFF1525 0.15 -2.6
121,245 - GFF1525 0.15 -0.6
121,245 - GFF1525 0.15 -1.2
121,245 - GFF1525 0.15 -0.3
121,245 - GFF1525 0.15 -2.2
121,308 - GFF1525 0.26 +0.6
121,528 + GFF1525 0.63 -4.1
121,528 + GFF1525 0.63 -1.3
121,528 + GFF1525 0.63 +0.5
121,528 + GFF1525 0.63 -0.3
121,528 + GFF1525 0.63 +0.4
121,529 - GFF1525 0.63 -0.6
121,529 - GFF1525 0.63 -0.0
121,529 - GFF1525 0.63 +5.7
121,757 - -1.2
121,775 + -0.3
121,977 + GFF1526 0.13 +0.0
121,978 - GFF1526 0.13 -2.3

Or see this region's nucleotide sequence