Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1278 and GFF1279 overlap by 4 nucleotides GFF1279 and GFF1280 are separated by 13 nucleotides GFF1280 and GFF1281 overlap by 10 nucleotides GFF1281 and GFF1282 are separated by 45 nucleotides
GFF1278 - no description, at 608,183 to 608,305
GFF1278
GFF1279 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 608,302 to 609,135
GFF1279
GFF1280 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 609,149 to 609,856
GFF1280
GFF1281 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 609,847 to 610,578
GFF1281
GFF1282 - Chromate reductase (EC 1.6.5.2), at 610,624 to 611,178
GFF1282
Position (kb) 609
610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 608.155 kb on + strand at 608.155 kb on + strand at 608.155 kb on + strand at 608.155 kb on + strand at 608.156 kb on - strand at 608.156 kb on - strand at 608.156 kb on - strand at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.221 kb on + strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.222 kb on - strand, within GFF1278 at 608.266 kb on + strand, within GFF1278 at 608.266 kb on + strand, within GFF1278 at 608.266 kb on + strand, within GFF1278 at 608.284 kb on + strand, within GFF1278 at 608.284 kb on + strand, within GFF1278 at 608.284 kb on + strand, within GFF1278 at 608.285 kb on - strand, within GFF1278 at 608.453 kb on - strand, within GFF1279 at 608.659 kb on + strand, within GFF1279 at 608.660 kb on - strand, within GFF1279 at 608.660 kb on - strand, within GFF1279 at 608.783 kb on - strand, within GFF1279 at 608.783 kb on - strand, within GFF1279 at 608.806 kb on + strand, within GFF1279 at 608.807 kb on - strand, within GFF1279 at 608.807 kb on - strand, within GFF1279 at 608.807 kb on - strand, within GFF1279 at 608.942 kb on + strand, within GFF1279 at 608.953 kb on + strand, within GFF1279 at 608.953 kb on + strand, within GFF1279 at 608.953 kb on + strand, within GFF1279 at 608.954 kb on - strand, within GFF1279 at 609.052 kb on + strand at 609.052 kb on + strand at 609.052 kb on + strand at 609.053 kb on - strand at 609.053 kb on - strand at 609.053 kb on - strand at 609.053 kb on - strand at 609.329 kb on + strand, within GFF1280 at 609.329 kb on + strand, within GFF1280 at 609.329 kb on + strand, within GFF1280 at 609.329 kb on + strand, within GFF1280 at 609.329 kb on + strand, within GFF1280 at 609.329 kb on + strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.330 kb on - strand, within GFF1280 at 609.380 kb on + strand, within GFF1280 at 609.380 kb on + strand, within GFF1280 at 609.380 kb on + strand, within GFF1280 at 609.428 kb on + strand, within GFF1280 at 609.428 kb on + strand, within GFF1280 at 609.428 kb on + strand, within GFF1280 at 609.428 kb on + strand, within GFF1280 at 609.429 kb on - strand, within GFF1280 at 609.429 kb on - strand, within GFF1280 at 609.429 kb on - strand, within GFF1280 at 609.429 kb on - strand, within GFF1280 at 609.429 kb on - strand, within GFF1280 at 609.485 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.497 kb on + strand, within GFF1280 at 609.498 kb on - strand, within GFF1280 at 609.498 kb on - strand, within GFF1280 at 609.498 kb on - strand, within GFF1280 at 609.498 kb on - strand, within GFF1280 at 609.498 kb on - strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.650 kb on + strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.651 kb on - strand, within GFF1280 at 609.710 kb on + strand, within GFF1280 at 609.711 kb on - strand, within GFF1280 at 609.779 kb on + strand, within GFF1280 at 609.779 kb on + strand, within GFF1280 at 609.779 kb on + strand, within GFF1280 at 609.780 kb on - strand, within GFF1280 at 609.780 kb on - strand, within GFF1280 at 609.780 kb on - strand, within GFF1280 at 609.780 kb on - strand, within GFF1280 at 609.884 kb on - strand at 609.884 kb on - strand at 610.093 kb on + strand, within GFF1281 at 610.093 kb on + strand, within GFF1281 at 610.093 kb on + strand, within GFF1281 at 610.093 kb on + strand, within GFF1281 at 610.093 kb on + strand, within GFF1281 at 610.093 kb on + strand, within GFF1281 at 610.094 kb on - strand, within GFF1281 at 610.094 kb on - strand, within GFF1281 at 610.094 kb on - strand, within GFF1281 at 610.177 kb on + strand, within GFF1281 at 610.177 kb on + strand, within GFF1281 at 610.363 kb on + strand, within GFF1281 at 610.363 kb on + strand, within GFF1281 at 610.363 kb on + strand, within GFF1281 at 610.363 kb on + strand, within GFF1281 at 610.363 kb on + strand, within GFF1281 at 610.363 kb on + strand, within GFF1281 at 610.363 kb on + strand, within GFF1281 at 610.363 kb on + strand, within GFF1281 at 610.364 kb on - strand, within GFF1281 at 610.364 kb on - strand, within GFF1281 at 610.364 kb on - strand, within GFF1281 at 610.364 kb on - strand, within GFF1281 at 610.364 kb on - strand, within GFF1281 at 610.365 kb on + strand, within GFF1281 at 610.365 kb on + strand, within GFF1281 at 610.366 kb on - strand, within GFF1281 at 610.366 kb on - strand, within GFF1281 at 610.366 kb on - strand, within GFF1281 at 610.426 kb on + strand, within GFF1281 at 610.463 kb on - strand, within GFF1281 at 610.463 kb on - strand, within GFF1281 at 610.463 kb on - strand, within GFF1281 at 610.463 kb on - strand, within GFF1281 at 610.463 kb on - strand, within GFF1281 at 610.675 kb on + strand at 610.675 kb on + strand at 610.675 kb on + strand at 610.675 kb on + strand at 610.675 kb on + strand at 610.676 kb on - strand at 610.676 kb on - strand at 610.676 kb on - strand at 610.762 kb on + strand, within GFF1282 at 610.762 kb on + strand, within GFF1282 at 610.763 kb on - strand, within GFF1282 at 610.763 kb on - strand, within GFF1282 at 610.763 kb on - strand, within GFF1282
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 608,155 + +2.7 608,155 + +1.7 608,155 + -0.6 608,155 + +0.2 608,156 - -0.6 608,156 - -1.9 608,156 - +0.9 608,221 + GFF1278 0.31 -2.0 608,221 + GFF1278 0.31 -0.0 608,221 + GFF1278 0.31 -2.9 608,221 + GFF1278 0.31 +0.1 608,221 + GFF1278 0.31 -1.3 608,221 + GFF1278 0.31 -0.8 608,222 - GFF1278 0.32 -0.7 608,222 - GFF1278 0.32 +1.7 608,222 - GFF1278 0.32 -1.5 608,222 - GFF1278 0.32 +0.8 608,222 - GFF1278 0.32 +0.5 608,266 + GFF1278 0.67 -3.2 608,266 + GFF1278 0.67 +0.9 608,266 + GFF1278 0.67 -1.1 608,284 + GFF1278 0.82 -0.1 608,284 + GFF1278 0.82 -1.5 608,284 + GFF1278 0.82 +1.1 608,285 - GFF1278 0.83 -1.3 608,453 - GFF1279 0.18 -1.7 608,659 + GFF1279 0.43 +1.4 608,660 - GFF1279 0.43 +0.1 608,660 - GFF1279 0.43 +1.3 608,783 - GFF1279 0.58 -0.9 608,783 - GFF1279 0.58 +1.0 608,806 + GFF1279 0.60 -1.1 608,807 - GFF1279 0.61 -0.1 608,807 - GFF1279 0.61 -1.1 608,807 - GFF1279 0.61 -0.8 608,942 + GFF1279 0.77 +0.1 608,953 + GFF1279 0.78 +0.8 608,953 + GFF1279 0.78 -1.5 608,953 + GFF1279 0.78 -1.3 608,954 - GFF1279 0.78 -2.3 609,052 + +0.9 609,052 + -1.2 609,052 + -2.7 609,053 - -3.7 609,053 - +1.7 609,053 - -3.8 609,053 - -0.7 609,329 + GFF1280 0.25 -0.4 609,329 + GFF1280 0.25 -2.6 609,329 + GFF1280 0.25 -3.2 609,329 + GFF1280 0.25 +1.2 609,329 + GFF1280 0.25 +0.3 609,329 + GFF1280 0.25 -1.5 609,330 - GFF1280 0.26 +1.9 609,330 - GFF1280 0.26 -2.7 609,330 - GFF1280 0.26 +1.7 609,330 - GFF1280 0.26 -0.1 609,330 - GFF1280 0.26 -2.1 609,330 - GFF1280 0.26 -0.8 609,330 - GFF1280 0.26 -3.6 609,380 + GFF1280 0.33 +0.6 609,380 + GFF1280 0.33 +1.1 609,380 + GFF1280 0.33 -2.6 609,428 + GFF1280 0.39 -0.7 609,428 + GFF1280 0.39 +1.1 609,428 + GFF1280 0.39 -0.0 609,428 + GFF1280 0.39 -2.0 609,429 - GFF1280 0.40 -1.5 609,429 - GFF1280 0.40 +1.7 609,429 - GFF1280 0.40 -1.6 609,429 - GFF1280 0.40 +0.3 609,429 - GFF1280 0.40 +0.8 609,485 + GFF1280 0.47 -1.9 609,497 + GFF1280 0.49 +0.5 609,497 + GFF1280 0.49 -1.1 609,497 + GFF1280 0.49 +1.5 609,497 + GFF1280 0.49 +0.6 609,497 + GFF1280 0.49 -0.6 609,497 + GFF1280 0.49 +0.6 609,497 + GFF1280 0.49 +0.1 609,497 + GFF1280 0.49 -1.7 609,498 - GFF1280 0.49 +1.2 609,498 - GFF1280 0.49 -0.7 609,498 - GFF1280 0.49 -0.9 609,498 - GFF1280 0.49 +0.5 609,498 - GFF1280 0.49 +2.8 609,650 + GFF1280 0.71 +0.1 609,650 + GFF1280 0.71 -2.6 609,650 + GFF1280 0.71 -1.5 609,650 + GFF1280 0.71 -1.0 609,650 + GFF1280 0.71 -0.4 609,650 + GFF1280 0.71 +1.1 609,650 + GFF1280 0.71 -1.3 609,650 + GFF1280 0.71 -1.7 609,651 - GFF1280 0.71 +1.5 609,651 - GFF1280 0.71 +0.7 609,651 - GFF1280 0.71 -1.1 609,651 - GFF1280 0.71 -1.9 609,651 - GFF1280 0.71 +1.1 609,651 - GFF1280 0.71 -2.4 609,651 - GFF1280 0.71 +1.0 609,710 + GFF1280 0.79 -1.3 609,711 - GFF1280 0.79 -0.3 609,779 + GFF1280 0.89 +0.1 609,779 + GFF1280 0.89 -1.1 609,779 + GFF1280 0.89 +1.8 609,780 - GFF1280 0.89 -2.9 609,780 - GFF1280 0.89 -1.3 609,780 - GFF1280 0.89 +1.3 609,780 - GFF1280 0.89 -1.3 609,884 - +1.7 609,884 - -0.8 610,093 + GFF1281 0.34 +0.3 610,093 + GFF1281 0.34 +1.2 610,093 + GFF1281 0.34 -1.5 610,093 + GFF1281 0.34 +0.7 610,093 + GFF1281 0.34 +0.5 610,093 + GFF1281 0.34 -0.7 610,094 - GFF1281 0.34 -2.5 610,094 - GFF1281 0.34 -0.7 610,094 - GFF1281 0.34 +2.2 610,177 + GFF1281 0.45 -4.3 610,177 + GFF1281 0.45 -3.6 610,363 + GFF1281 0.70 +1.0 610,363 + GFF1281 0.70 -0.7 610,363 + GFF1281 0.70 -1.9 610,363 + GFF1281 0.70 +0.9 610,363 + GFF1281 0.70 -0.0 610,363 + GFF1281 0.70 -1.6 610,363 + GFF1281 0.70 +1.8 610,363 + GFF1281 0.70 -0.8 610,364 - GFF1281 0.71 -2.5 610,364 - GFF1281 0.71 -3.4 610,364 - GFF1281 0.71 -1.1 610,364 - GFF1281 0.71 -0.7 610,364 - GFF1281 0.71 -1.1 610,365 + GFF1281 0.71 -2.0 610,365 + GFF1281 0.71 +0.7 610,366 - GFF1281 0.71 +0.9 610,366 - GFF1281 0.71 +0.1 610,366 - GFF1281 0.71 +0.2 610,426 + GFF1281 0.79 +0.8 610,463 - GFF1281 0.84 +0.9 610,463 - GFF1281 0.84 -1.3 610,463 - GFF1281 0.84 -2.0 610,463 - GFF1281 0.84 -1.1 610,463 - GFF1281 0.84 -3.0 610,675 + +2.5 610,675 + +0.4 610,675 + -0.2 610,675 + +0.3 610,675 + -3.9 610,676 - -0.9 610,676 - -1.0 610,676 - -0.4 610,762 + GFF1282 0.25 -1.8 610,762 + GFF1282 0.25 -0.5 610,763 - GFF1282 0.25 +2.3 610,763 - GFF1282 0.25 -0.9 610,763 - GFF1282 0.25 -0.9
Or see this region's nucleotide sequence