Strain Fitness in Variovorax sp. SCN45 around GFF1219

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1218 and GFF1219 are separated by 166 nucleotidesGFF1219 and GFF1220 are separated by 73 nucleotidesGFF1220 and GFF1221 overlap by 23 nucleotidesGFF1221 and GFF1222 are separated by 9 nucleotides GFF1218 - O-antigen acetylase, at 538,348 to 539,502 GFF1218 GFF1219 - SAM-dependent methyltransferase, at 539,669 to 540,541 GFF1219 GFF1220 - Transcriptional regulator, MerR family, at 540,615 to 541,091 GFF1220 GFF1221 - KEGG: putative acetyltransferase , at 541,069 to 541,521 GFF1221 GFF1222 - Methylglyoxal synthase (EC 4.2.3.3), at 541,531 to 542,454 GFF1222 Position (kb) 539 540 541Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 538.825 kb on + strand, within GFF1218at 538.825 kb on + strand, within GFF1218at 538.825 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.840 kb on + strand, within GFF1218at 538.841 kb on - strand, within GFF1218at 538.841 kb on - strand, within GFF1218at 538.841 kb on - strand, within GFF1218at 538.841 kb on - strand, within GFF1218at 538.841 kb on - strand, within GFF1218at 538.841 kb on - strand, within GFF1218at 538.870 kb on + strand, within GFF1218at 538.870 kb on + strand, within GFF1218at 538.870 kb on + strand, within GFF1218at 538.870 kb on + strand, within GFF1218at 538.871 kb on - strand, within GFF1218at 538.871 kb on - strand, within GFF1218at 538.928 kb on + strand, within GFF1218at 538.929 kb on - strand, within GFF1218at 538.929 kb on - strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.990 kb on + strand, within GFF1218at 538.991 kb on - strand, within GFF1218at 538.991 kb on - strand, within GFF1218at 538.991 kb on - strand, within GFF1218at 538.991 kb on - strand, within GFF1218at 538.991 kb on - strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 538.999 kb on + strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.000 kb on - strand, within GFF1218at 539.001 kb on - strand, within GFF1218at 539.131 kb on + strand, within GFF1218at 539.131 kb on + strand, within GFF1218at 539.131 kb on + strand, within GFF1218at 539.132 kb on - strand, within GFF1218at 539.132 kb on - strand, within GFF1218at 539.132 kb on - strand, within GFF1218at 539.287 kb on + strand, within GFF1218at 539.287 kb on + strand, within GFF1218at 539.287 kb on + strand, within GFF1218at 539.287 kb on + strand, within GFF1218at 539.287 kb on + strand, within GFF1218at 539.287 kb on + strand, within GFF1218at 539.288 kb on - strand, within GFF1218at 539.288 kb on - strand, within GFF1218at 539.288 kb on - strand, within GFF1218at 539.296 kb on + strand, within GFF1218at 539.296 kb on + strand, within GFF1218at 539.296 kb on + strand, within GFF1218at 539.296 kb on + strand, within GFF1218at 539.296 kb on + strand, within GFF1218at 539.296 kb on + strand, within GFF1218at 539.296 kb on + strand, within GFF1218at 539.297 kb on - strand, within GFF1218at 539.297 kb on - strand, within GFF1218at 539.297 kb on - strand, within GFF1218at 539.297 kb on - strand, within GFF1218at 539.297 kb on - strand, within GFF1218at 539.297 kb on - strand, within GFF1218at 539.297 kb on - strand, within GFF1218at 539.297 kb on - strand, within GFF1218at 539.297 kb on - strand, within GFF1218at 539.297 kb on - strand, within GFF1218at 539.297 kb on - strand, within GFF1218at 539.435 kb on - strandat 539.566 kb on - strandat 539.626 kb on + strandat 539.754 kb on + strandat 539.754 kb on + strandat 539.754 kb on + strandat 539.754 kb on + strandat 539.754 kb on + strandat 539.754 kb on + strandat 539.754 kb on + strandat 539.754 kb on + strandat 539.754 kb on + strandat 539.754 kb on + strandat 539.754 kb on + strandat 539.754 kb on + strandat 539.755 kb on - strandat 539.755 kb on - strandat 539.755 kb on - strandat 539.755 kb on - strandat 539.755 kb on - strandat 539.755 kb on - strandat 539.755 kb on - strandat 539.755 kb on - strandat 539.755 kb on - strandat 539.755 kb on - strandat 539.755 kb on - strandat 539.755 kb on - strandat 539.755 kb on - strandat 539.853 kb on + strand, within GFF1219at 539.853 kb on + strand, within GFF1219at 539.854 kb on - strand, within GFF1219at 539.854 kb on - strand, within GFF1219at 540.461 kb on + strandat 540.461 kb on + strandat 540.461 kb on + strandat 540.461 kb on + strandat 540.461 kb on + strandat 540.461 kb on + strandat 540.461 kb on + strandat 540.461 kb on + strandat 540.461 kb on + strandat 540.461 kb on + strandat 540.461 kb on + strandat 540.461 kb on + strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.462 kb on - strandat 540.463 kb on + strandat 540.463 kb on + strandat 540.464 kb on - strandat 540.464 kb on - strandat 540.583 kb on - strandat 540.678 kb on + strand, within GFF1220at 540.678 kb on + strand, within GFF1220at 540.679 kb on - strand, within GFF1220at 540.679 kb on - strand, within GFF1220at 540.679 kb on - strand, within GFF1220at 540.679 kb on - strand, within GFF1220at 540.679 kb on - strand, within GFF1220at 540.679 kb on - strand, within GFF1220at 540.681 kb on + strand, within GFF1220at 540.681 kb on + strand, within GFF1220at 540.682 kb on - strand, within GFF1220at 541.071 kb on - strandat 541.115 kb on + strand, within GFF1221at 541.116 kb on - strand, within GFF1221at 541.142 kb on + strand, within GFF1221at 541.143 kb on - strand, within GFF1221at 541.143 kb on - strand, within GFF1221at 541.157 kb on + strand, within GFF1221at 541.439 kb on + strand, within GFF1221at 541.439 kb on + strand, within GFF1221at 541.439 kb on + strand, within GFF1221at 541.440 kb on - strand, within GFF1221at 541.440 kb on - strand, within GFF1221at 541.454 kb on + strand, within GFF1221at 541.532 kb on + strandat 541.532 kb on + strandat 541.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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538,825 + GFF1218 0.41 -2.2
538,825 + GFF1218 0.41 -3.4
538,825 + GFF1218 0.41 -0.0
538,840 + GFF1218 0.43 +0.3
538,840 + GFF1218 0.43 -1.1
538,840 + GFF1218 0.43 -1.5
538,840 + GFF1218 0.43 +0.2
538,840 + GFF1218 0.43 +2.1
538,840 + GFF1218 0.43 -3.4
538,840 + GFF1218 0.43 +0.6
538,840 + GFF1218 0.43 +0.2
538,841 - GFF1218 0.43 -0.3
538,841 - GFF1218 0.43 -1.9
538,841 - GFF1218 0.43 -0.5
538,841 - GFF1218 0.43 +1.5
538,841 - GFF1218 0.43 -2.8
538,841 - GFF1218 0.43 +2.0
538,870 + GFF1218 0.45 +0.6
538,870 + GFF1218 0.45 -0.2
538,870 + GFF1218 0.45 +1.1
538,870 + GFF1218 0.45 +0.1
538,871 - GFF1218 0.45 -1.7
538,871 - GFF1218 0.45 +0.1
538,928 + GFF1218 0.50 -1.5
538,929 - GFF1218 0.50 +0.1
538,929 - GFF1218 0.50 +0.7
538,990 + GFF1218 0.56 -0.2
538,990 + GFF1218 0.56 -0.0
538,990 + GFF1218 0.56 -1.4
538,990 + GFF1218 0.56 -2.1
538,990 + GFF1218 0.56 +0.0
538,990 + GFF1218 0.56 -1.3
538,990 + GFF1218 0.56 +1.5
538,990 + GFF1218 0.56 -0.7
538,991 - GFF1218 0.56 -1.7
538,991 - GFF1218 0.56 -1.9
538,991 - GFF1218 0.56 -1.7
538,991 - GFF1218 0.56 +2.3
538,991 - GFF1218 0.56 +0.5
538,999 + GFF1218 0.56 -2.0
538,999 + GFF1218 0.56 -1.9
538,999 + GFF1218 0.56 -0.1
538,999 + GFF1218 0.56 +2.5
538,999 + GFF1218 0.56 -1.7
538,999 + GFF1218 0.56 +2.4
538,999 + GFF1218 0.56 -1.8
538,999 + GFF1218 0.56 -1.0
538,999 + GFF1218 0.56 +0.2
538,999 + GFF1218 0.56 -0.9
538,999 + GFF1218 0.56 -1.1
538,999 + GFF1218 0.56 +1.3
538,999 + GFF1218 0.56 +0.3
538,999 + GFF1218 0.56 -3.3
538,999 + GFF1218 0.56 -3.3
539,000 - GFF1218 0.56 -1.9
539,000 - GFF1218 0.56 -1.1
539,000 - GFF1218 0.56 -0.3
539,000 - GFF1218 0.56 -3.0
539,000 - GFF1218 0.56 -1.6
539,000 - GFF1218 0.56 -0.3
539,000 - GFF1218 0.56 +0.6
539,001 - GFF1218 0.57 +0.1
539,131 + GFF1218 0.68 -0.6
539,131 + GFF1218 0.68 +0.5
539,131 + GFF1218 0.68 -1.7
539,132 - GFF1218 0.68 -0.9
539,132 - GFF1218 0.68 -1.1
539,132 - GFF1218 0.68 +0.9
539,287 + GFF1218 0.81 -0.1
539,287 + GFF1218 0.81 +1.4
539,287 + GFF1218 0.81 +0.6
539,287 + GFF1218 0.81 -2.0
539,287 + GFF1218 0.81 +0.1
539,287 + GFF1218 0.81 +0.3
539,288 - GFF1218 0.81 -0.5
539,288 - GFF1218 0.81 +1.2
539,288 - GFF1218 0.81 -0.9
539,296 + GFF1218 0.82 -1.7
539,296 + GFF1218 0.82 -2.1
539,296 + GFF1218 0.82 -0.4
539,296 + GFF1218 0.82 -0.4
539,296 + GFF1218 0.82 -0.2
539,296 + GFF1218 0.82 -2.6
539,296 + GFF1218 0.82 -1.8
539,297 - GFF1218 0.82 +0.7
539,297 - GFF1218 0.82 -1.8
539,297 - GFF1218 0.82 +0.9
539,297 - GFF1218 0.82 +0.6
539,297 - GFF1218 0.82 -1.9
539,297 - GFF1218 0.82 +0.1
539,297 - GFF1218 0.82 -1.8
539,297 - GFF1218 0.82 +0.5
539,297 - GFF1218 0.82 -3.4
539,297 - GFF1218 0.82 -1.5
539,297 - GFF1218 0.82 -2.7
539,435 - -0.3
539,566 - -2.4
539,626 + +0.0
539,754 + -2.7
539,754 + -0.9
539,754 + +0.1
539,754 + -0.3
539,754 + +3.9
539,754 + -0.9
539,754 + -1.3
539,754 + -0.3
539,754 + +1.1
539,754 + -0.3
539,754 + -0.3
539,754 + +1.5
539,755 - -2.9
539,755 - +0.7
539,755 - +1.9
539,755 - -0.7
539,755 - -2.4
539,755 - -3.4
539,755 - -1.3
539,755 - -2.1
539,755 - +0.9
539,755 - -1.7
539,755 - +2.7
539,755 - +0.9
539,755 - -2.0
539,853 + GFF1219 0.21 -1.6
539,853 + GFF1219 0.21 +2.1
539,854 - GFF1219 0.21 +0.9
539,854 - GFF1219 0.21 +1.0
540,461 + -1.3
540,461 + -1.9
540,461 + -0.1
540,461 + -0.6
540,461 + +0.1
540,461 + +1.3
540,461 + -0.7
540,461 + -0.6
540,461 + -3.8
540,461 + +0.9
540,461 + +0.3
540,461 + -3.8
540,462 - -2.0
540,462 - +0.1
540,462 - +2.3
540,462 - -1.3
540,462 - -1.6
540,462 - +0.9
540,462 - -1.7
540,462 - -2.7
540,462 - +1.3
540,462 - -3.0
540,462 - -2.5
540,462 - -3.5
540,462 - -1.2
540,462 - -1.9
540,462 - -2.3
540,462 - -1.4
540,462 - +0.6
540,462 - -0.8
540,462 - +0.4
540,463 + -1.2
540,463 + -1.0
540,464 - -0.9
540,464 - +1.0
540,583 - -0.7
540,678 + GFF1220 0.13 -1.9
540,678 + GFF1220 0.13 +0.1
540,679 - GFF1220 0.13 -1.2
540,679 - GFF1220 0.13 -1.2
540,679 - GFF1220 0.13 -2.6
540,679 - GFF1220 0.13 +0.8
540,679 - GFF1220 0.13 +0.5
540,679 - GFF1220 0.13 -1.7
540,681 + GFF1220 0.14 -2.4
540,681 + GFF1220 0.14 +0.5
540,682 - GFF1220 0.14 -1.3
541,071 - +0.7
541,115 + GFF1221 0.10 -2.8
541,116 - GFF1221 0.10 -1.6
541,142 + GFF1221 0.16 -2.9
541,143 - GFF1221 0.16 -0.9
541,143 - GFF1221 0.16 +1.7
541,157 + GFF1221 0.19 -0.8
541,439 + GFF1221 0.82 -1.1
541,439 + GFF1221 0.82 -1.8
541,439 + GFF1221 0.82 +0.3
541,440 - GFF1221 0.82 -0.3
541,440 - GFF1221 0.82 -0.3
541,454 + GFF1221 0.85 +0.1
541,532 + -3.6
541,532 + -0.7
541,533 - +0.4

Or see this region's nucleotide sequence