Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1040 and GFF1041 are separated by 18 nucleotides GFF1041 and GFF1043 overlap by 4 nucleotides GFF1043 and GFF1042 overlap by 2 nucleotides GFF1042 and GFF1044 are separated by 13 nucleotides
GFF1040 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 357,342 to 358,244
GFF1040
GFF1041 - Transcriptional regulator, AsnC family, at 358,263 to 358,721
GFF1041
GFF1043 - no description, at 358,718 to 358,846
GFF1043
GFF1042 - Glutathione S-transferase, unnamed subgroup 2 (EC 2.5.1.18), at 358,845 to 359,453
GFF1042
GFF1044 - hypothetical protein, at 359,467 to 359,856
GFF1044
Position (kb) 358
359 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 357.270 kb on + strand at 357.270 kb on + strand at 357.270 kb on + strand at 357.270 kb on + strand at 357.271 kb on - strand at 357.271 kb on - strand at 357.271 kb on - strand at 357.271 kb on - strand at 357.271 kb on - strand at 357.295 kb on - strand at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.712 kb on - strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 358.155 kb on + strand at 358.155 kb on + strand at 358.155 kb on + strand at 358.155 kb on + strand at 358.156 kb on - strand at 358.156 kb on - strand at 358.251 kb on - strand at 358.264 kb on + strand at 358.264 kb on + strand at 358.264 kb on + strand at 358.264 kb on + strand at 358.265 kb on - strand at 358.265 kb on - strand at 358.265 kb on - strand at 358.265 kb on - strand at 358.480 kb on + strand, within GFF1041 at 358.480 kb on + strand, within GFF1041 at 358.481 kb on - strand, within GFF1041 at 358.567 kb on + strand, within GFF1041 at 358.567 kb on + strand, within GFF1041 at 358.813 kb on + strand, within GFF1043 at 359.166 kb on + strand, within GFF1042 at 359.166 kb on + strand, within GFF1042 at 359.166 kb on + strand, within GFF1042 at 359.167 kb on - strand, within GFF1042 at 359.244 kb on + strand, within GFF1042 at 359.245 kb on - strand, within GFF1042 at 359.400 kb on + strand at 359.400 kb on + strand at 359.546 kb on + strand, within GFF1044 at 359.546 kb on + strand, within GFF1044 at 359.546 kb on + strand, within GFF1044 at 359.546 kb on + strand, within GFF1044 at 359.546 kb on + strand, within GFF1044 at 359.546 kb on + strand, within GFF1044 at 359.547 kb on - strand, within GFF1044 at 359.547 kb on - strand, within GFF1044 at 359.547 kb on - strand, within GFF1044 at 359.547 kb on - strand, within GFF1044 at 359.547 kb on - strand, within GFF1044 at 359.547 kb on - strand, within GFF1044 at 359.547 kb on - strand, within GFF1044
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 357,270 + +0.8 357,270 + +1.3 357,270 + -1.7 357,270 + +0.2 357,271 - -2.6 357,271 - -0.4 357,271 - -2.1 357,271 - +0.5 357,271 - -0.6 357,295 - -2.8 357,711 + GFF1040 0.41 -1.8 357,711 + GFF1040 0.41 -3.8 357,711 + GFF1040 0.41 -2.2 357,711 + GFF1040 0.41 -1.7 357,711 + GFF1040 0.41 -0.2 357,711 + GFF1040 0.41 +0.2 357,712 - GFF1040 0.41 -0.1 357,834 + GFF1040 0.54 -1.6 357,834 + GFF1040 0.54 -2.1 357,834 + GFF1040 0.54 -1.2 357,834 + GFF1040 0.54 -1.1 357,834 + GFF1040 0.54 -0.6 357,834 + GFF1040 0.54 -1.9 357,835 - GFF1040 0.55 +2.3 357,835 - GFF1040 0.55 -1.0 357,835 - GFF1040 0.55 +3.8 357,835 - GFF1040 0.55 -1.2 357,835 - GFF1040 0.55 -0.5 357,835 - GFF1040 0.55 +0.6 358,155 + -1.9 358,155 + -0.4 358,155 + +0.4 358,155 + +0.2 358,156 - +1.3 358,156 - -0.9 358,251 - +0.8 358,264 + +0.6 358,264 + -0.8 358,264 + -1.6 358,264 + +1.3 358,265 - -2.2 358,265 - -0.6 358,265 - -2.1 358,265 - -0.2 358,480 + GFF1041 0.47 -2.1 358,480 + GFF1041 0.47 -0.5 358,481 - GFF1041 0.47 -0.8 358,567 + GFF1041 0.66 +1.2 358,567 + GFF1041 0.66 -2.8 358,813 + GFF1043 0.74 +1.8 359,166 + GFF1042 0.53 -0.8 359,166 + GFF1042 0.53 -0.0 359,166 + GFF1042 0.53 +0.6 359,167 - GFF1042 0.53 +0.2 359,244 + GFF1042 0.66 -2.2 359,245 - GFF1042 0.66 -0.2 359,400 + -1.7 359,400 + -2.3 359,546 + GFF1044 0.20 -2.3 359,546 + GFF1044 0.20 -0.3 359,546 + GFF1044 0.20 +1.7 359,546 + GFF1044 0.20 +0.5 359,546 + GFF1044 0.20 -1.7 359,546 + GFF1044 0.20 +1.8 359,547 - GFF1044 0.21 +1.9 359,547 - GFF1044 0.21 +1.5 359,547 - GFF1044 0.21 -4.2 359,547 - GFF1044 0.21 +0.2 359,547 - GFF1044 0.21 +0.8 359,547 - GFF1044 0.21 -2.1 359,547 - GFF1044 0.21 -0.8
Or see this region's nucleotide sequence