Strain Fitness in Variovorax sp. SCN45 around GFF984

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF982 and GFF983 overlap by 4 nucleotidesGFF983 and GFF984 are separated by 40 nucleotidesGFF984 and GFF985 are separated by 184 nucleotidesGFF985 and GFF986 overlap by 4 nucleotides GFF982 - Cell division protein ZapE, at 300,717 to 301,817 GFF982 GFF983 - hypothetical protein, at 301,814 to 302,497 GFF983 GFF984 - Protein phosphatase 2C-like, at 302,538 to 303,230 GFF984 GFF985 - Uncharacterized protein SMc04000, at 303,415 to 303,618 GFF985 GFF986 - DinG family ATP-dependent helicase YoaA, at 303,615 to 305,705 GFF986 Position (kb) 302 303 304Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 301.647 kb on + strand, within GFF982at 301.648 kb on - strand, within GFF982at 301.648 kb on - strand, within GFF982at 301.648 kb on - strand, within GFF982at 301.648 kb on - strand, within GFF982at 301.701 kb on + strand, within GFF982at 301.701 kb on + strand, within GFF982at 301.701 kb on + strand, within GFF982at 301.701 kb on + strand, within GFF982at 301.701 kb on + strand, within GFF982at 301.701 kb on + strand, within GFF982at 301.701 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.980 kb on - strand, within GFF983at 301.980 kb on - strand, within GFF983at 301.980 kb on - strand, within GFF983at 301.980 kb on - strand, within GFF983at 301.980 kb on - strand, within GFF983at 301.980 kb on - strand, within GFF983at 301.980 kb on - strand, within GFF983at 302.020 kb on + strand, within GFF983at 302.326 kb on + strand, within GFF983at 302.506 kb on + strandat 302.506 kb on + strandat 302.507 kb on - strandat 302.582 kb on - strandat 302.662 kb on + strand, within GFF984at 302.662 kb on + strand, within GFF984at 302.662 kb on + strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.696 kb on - strand, within GFF984at 302.696 kb on - strand, within GFF984at 302.696 kb on - strand, within GFF984at 302.696 kb on - strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.828 kb on + strand, within GFF984at 302.829 kb on - strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.878 kb on + strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.879 kb on - strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.926 kb on + strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 302.927 kb on - strand, within GFF984at 303.250 kb on + strandat 303.288 kb on + strandat 303.288 kb on + strandat 303.288 kb on + strandat 303.288 kb on + strandat 303.288 kb on + strandat 303.288 kb on + strandat 303.289 kb on - strandat 303.289 kb on - strandat 303.289 kb on - strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.315 kb on + strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.316 kb on - strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.365 kb on + strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.366 kb on - strandat 303.368 kb on + strandat 303.369 kb on - strandat 303.369 kb on - strandat 303.714 kb on + strandat 303.801 kb on + strandat 303.801 kb on + strandat 303.801 kb on + strandat 303.802 kb on - strandat 303.802 kb on - strandat 303.802 kb on - strandat 303.954 kb on + strand, within GFF986at 303.954 kb on + strand, within GFF986at 303.954 kb on + strand, within GFF986at 303.954 kb on + strand, within GFF986at 303.954 kb on + strand, within GFF986at 303.954 kb on + strand, within GFF986at 303.954 kb on + strand, within GFF986at 303.955 kb on - strand, within GFF986at 303.955 kb on - strand, within GFF986at 303.955 kb on - strand, within GFF986at 303.955 kb on - strand, within GFF986at 303.955 kb on - strand, within GFF986at 303.955 kb on - strand, within GFF986at 303.955 kb on - strand, within GFF986at 304.049 kb on + strand, within GFF986at 304.049 kb on + strand, within GFF986at 304.049 kb on + strand, within GFF986at 304.049 kb on + strand, within GFF986at 304.111 kb on + strand, within GFF986at 304.111 kb on + strand, within GFF986at 304.112 kb on - strand, within GFF986at 304.112 kb on - strand, within GFF986

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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301,647 + GFF982 0.84 -1.4
301,648 - GFF982 0.85 -1.0
301,648 - GFF982 0.85 -0.4
301,648 - GFF982 0.85 -2.4
301,648 - GFF982 0.85 -0.4
301,701 + GFF982 0.89 -1.2
301,701 + GFF982 0.89 -1.7
301,701 + GFF982 0.89 -2.8
301,701 + GFF982 0.89 -1.4
301,701 + GFF982 0.89 -2.1
301,701 + GFF982 0.89 -0.6
301,701 - GFF982 0.89 -1.6
301,702 - GFF982 0.89 +0.6
301,702 - GFF982 0.89 +0.6
301,702 - GFF982 0.89 -1.5
301,702 - GFF982 0.89 -1.4
301,702 - GFF982 0.89 -2.2
301,702 - GFF982 0.89 -2.9
301,702 - GFF982 0.89 -2.6
301,979 + GFF983 0.24 +0.9
301,979 + GFF983 0.24 +0.0
301,979 + GFF983 0.24 -0.4
301,979 + GFF983 0.24 +0.0
301,979 + GFF983 0.24 +0.8
301,979 + GFF983 0.24 -1.0
301,979 + GFF983 0.24 +1.6
301,979 + GFF983 0.24 -1.6
301,980 - GFF983 0.24 -0.4
301,980 - GFF983 0.24 -0.9
301,980 - GFF983 0.24 +0.0
301,980 - GFF983 0.24 -2.9
301,980 - GFF983 0.24 +0.6
301,980 - GFF983 0.24 -0.6
301,980 - GFF983 0.24 -1.0
302,020 + GFF983 0.30 -0.4
302,326 + GFF983 0.75 +0.8
302,506 + -0.5
302,506 + +0.4
302,507 - +1.6
302,582 - +0.0
302,662 + GFF984 0.18 +0.1
302,662 + GFF984 0.18 +1.2
302,662 + GFF984 0.18 +0.4
302,663 - GFF984 0.18 +1.3
302,663 - GFF984 0.18 +0.0
302,663 - GFF984 0.18 -1.3
302,663 - GFF984 0.18 -0.4
302,663 - GFF984 0.18 -2.6
302,663 - GFF984 0.18 -1.4
302,695 + GFF984 0.23 +2.5
302,695 + GFF984 0.23 -2.2
302,695 + GFF984 0.23 -1.0
302,695 + GFF984 0.23 +3.4
302,695 + GFF984 0.23 +1.1
302,695 + GFF984 0.23 +0.3
302,695 + GFF984 0.23 -1.4
302,695 + GFF984 0.23 -0.2
302,696 - GFF984 0.23 -1.6
302,696 - GFF984 0.23 +0.1
302,696 - GFF984 0.23 +0.6
302,696 - GFF984 0.23 -3.2
302,755 + GFF984 0.31 -3.1
302,755 + GFF984 0.31 +0.8
302,755 + GFF984 0.31 +1.1
302,755 + GFF984 0.31 +0.1
302,755 + GFF984 0.31 -2.6
302,755 + GFF984 0.31 +0.6
302,755 + GFF984 0.31 -0.2
302,755 + GFF984 0.31 -0.4
302,755 + GFF984 0.31 +0.7
302,755 + GFF984 0.31 -2.6
302,755 + GFF984 0.31 +0.0
302,755 + GFF984 0.31 -1.7
302,755 + GFF984 0.31 -0.8
302,755 + GFF984 0.31 +0.4
302,755 + GFF984 0.31 -2.5
302,755 + GFF984 0.31 +1.7
302,755 + GFF984 0.31 -0.4
302,755 + GFF984 0.31 +1.2
302,755 + GFF984 0.31 +0.4
302,756 - GFF984 0.31 +0.3
302,756 - GFF984 0.31 -2.1
302,756 - GFF984 0.31 -3.1
302,756 - GFF984 0.31 +0.1
302,756 - GFF984 0.31 +1.5
302,756 - GFF984 0.31 -2.2
302,756 - GFF984 0.31 -1.4
302,756 - GFF984 0.31 +1.3
302,756 - GFF984 0.31 -0.9
302,756 - GFF984 0.31 -0.1
302,756 - GFF984 0.31 +4.2
302,756 - GFF984 0.31 -2.1
302,756 - GFF984 0.31 +1.0
302,756 - GFF984 0.31 -0.1
302,828 + GFF984 0.42 +0.6
302,829 - GFF984 0.42 -1.3
302,878 + GFF984 0.49 -0.1
302,878 + GFF984 0.49 -2.9
302,878 + GFF984 0.49 +1.0
302,878 + GFF984 0.49 +0.2
302,878 + GFF984 0.49 -1.4
302,878 + GFF984 0.49 +1.6
302,878 + GFF984 0.49 -0.2
302,878 + GFF984 0.49 -0.7
302,878 + GFF984 0.49 -2.8
302,878 + GFF984 0.49 +2.4
302,878 + GFF984 0.49 -0.6
302,879 - GFF984 0.49 +2.6
302,879 - GFF984 0.49 -3.8
302,879 - GFF984 0.49 +0.0
302,879 - GFF984 0.49 -2.9
302,879 - GFF984 0.49 -0.5
302,879 - GFF984 0.49 +0.8
302,879 - GFF984 0.49 +1.4
302,879 - GFF984 0.49 -1.4
302,879 - GFF984 0.49 -0.7
302,879 - GFF984 0.49 +1.3
302,879 - GFF984 0.49 -0.7
302,926 + GFF984 0.56 +1.5
302,926 + GFF984 0.56 -1.0
302,926 + GFF984 0.56 -0.3
302,926 + GFF984 0.56 +1.2
302,926 + GFF984 0.56 -1.3
302,926 + GFF984 0.56 +3.3
302,926 + GFF984 0.56 -2.2
302,926 + GFF984 0.56 -1.2
302,926 + GFF984 0.56 -2.9
302,926 + GFF984 0.56 +0.0
302,926 + GFF984 0.56 -0.4
302,927 - GFF984 0.56 +0.9
302,927 - GFF984 0.56 +0.1
302,927 - GFF984 0.56 -3.0
302,927 - GFF984 0.56 -0.1
302,927 - GFF984 0.56 +0.4
302,927 - GFF984 0.56 -1.7
302,927 - GFF984 0.56 -1.3
302,927 - GFF984 0.56 +1.5
302,927 - GFF984 0.56 -1.9
302,927 - GFF984 0.56 -1.1
302,927 - GFF984 0.56 -0.8
302,927 - GFF984 0.56 -1.2
302,927 - GFF984 0.56 -2.1
303,250 + +0.9
303,288 + +1.4
303,288 + -0.1
303,288 + +0.5
303,288 + -2.5
303,288 + +0.0
303,288 + -0.7
303,289 - -1.0
303,289 - -1.1
303,289 - -2.0
303,315 + -2.2
303,315 + +0.2
303,315 + -1.1
303,315 + +0.6
303,315 + -1.4
303,315 + +1.5
303,315 + -1.4
303,315 + +0.9
303,315 + +1.6
303,315 + -0.1
303,315 + -2.4
303,315 + +0.7
303,315 + -0.3
303,315 + -0.1
303,316 - +0.0
303,316 - -2.0
303,316 - +2.1
303,316 - +2.0
303,316 - +0.3
303,316 - -1.0
303,316 - +1.6
303,316 - -1.0
303,316 - -1.7
303,316 - -1.9
303,316 - -1.0
303,316 - -3.3
303,316 - -2.4
303,316 - +1.1
303,316 - -2.7
303,316 - +0.0
303,365 + +0.8
303,365 + -0.5
303,365 + +0.6
303,365 + -0.2
303,365 + -1.6
303,365 + -2.3
303,365 + -1.6
303,365 + -4.3
303,366 - -1.2
303,366 - -2.1
303,366 - -2.0
303,366 - -0.9
303,366 - -0.3
303,366 - -2.1
303,366 - -2.6
303,366 - -0.3
303,368 + -3.0
303,369 - +0.2
303,369 - -2.9
303,714 + -1.0
303,801 + +1.5
303,801 + +0.3
303,801 + -1.9
303,802 - -3.6
303,802 - +1.0
303,802 - +3.2
303,954 + GFF986 0.16 -0.7
303,954 + GFF986 0.16 -3.2
303,954 + GFF986 0.16 +0.9
303,954 + GFF986 0.16 +0.2
303,954 + GFF986 0.16 -2.7
303,954 + GFF986 0.16 +0.1
303,954 + GFF986 0.16 +1.0
303,955 - GFF986 0.16 +2.1
303,955 - GFF986 0.16 -1.0
303,955 - GFF986 0.16 -1.1
303,955 - GFF986 0.16 -2.4
303,955 - GFF986 0.16 +1.9
303,955 - GFF986 0.16 -0.5
303,955 - GFF986 0.16 -0.4
304,049 + GFF986 0.21 -0.4
304,049 + GFF986 0.21 -3.3
304,049 + GFF986 0.21 -1.6
304,049 + GFF986 0.21 -4.3
304,111 + GFF986 0.24 -2.5
304,111 + GFF986 0.24 -1.7
304,112 - GFF986 0.24 -1.0
304,112 - GFF986 0.24 +0.4

Or see this region's nucleotide sequence