Strain Fitness in Variovorax sp. SCN45 around GFF982

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF981 and GFF982 are separated by 4 nucleotidesGFF982 and GFF983 overlap by 4 nucleotidesGFF983 and GFF984 are separated by 40 nucleotides GFF981 - Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4), at 299,282 to 300,712 GFF981 GFF982 - Cell division protein ZapE, at 300,717 to 301,817 GFF982 GFF983 - hypothetical protein, at 301,814 to 302,497 GFF983 GFF984 - Protein phosphatase 2C-like, at 302,538 to 303,230 GFF984 Position (kb) 300 301 302Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 300.738 kb on + strandat 300.738 kb on + strandat 300.738 kb on + strandat 300.738 kb on + strandat 300.738 kb on + strandat 300.738 kb on + strandat 300.738 kb on + strandat 300.738 kb on + strandat 300.738 kb on + strandat 300.738 kb on + strandat 300.739 kb on - strandat 300.739 kb on - strandat 300.739 kb on - strandat 300.739 kb on - strandat 300.834 kb on + strand, within GFF982at 300.834 kb on + strand, within GFF982at 300.834 kb on + strand, within GFF982at 300.834 kb on + strand, within GFF982at 300.835 kb on - strand, within GFF982at 300.835 kb on - strand, within GFF982at 300.835 kb on - strand, within GFF982at 300.835 kb on - strand, within GFF982at 300.835 kb on - strand, within GFF982at 300.835 kb on - strand, within GFF982at 300.835 kb on - strand, within GFF982at 300.835 kb on - strand, within GFF982at 300.900 kb on + strand, within GFF982at 300.900 kb on + strand, within GFF982at 300.900 kb on + strand, within GFF982at 300.900 kb on + strand, within GFF982at 300.901 kb on - strand, within GFF982at 300.901 kb on - strand, within GFF982at 300.901 kb on - strand, within GFF982at 300.901 kb on - strand, within GFF982at 300.901 kb on - strand, within GFF982at 300.901 kb on - strand, within GFF982at 300.901 kb on - strand, within GFF982at 300.901 kb on - strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.906 kb on + strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 300.907 kb on - strand, within GFF982at 301.086 kb on + strand, within GFF982at 301.086 kb on + strand, within GFF982at 301.086 kb on + strand, within GFF982at 301.087 kb on - strand, within GFF982at 301.087 kb on - strand, within GFF982at 301.087 kb on - strand, within GFF982at 301.222 kb on - strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.347 kb on + strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.348 kb on - strand, within GFF982at 301.440 kb on - strand, within GFF982at 301.440 kb on - strand, within GFF982at 301.536 kb on + strand, within GFF982at 301.537 kb on - strand, within GFF982at 301.647 kb on + strand, within GFF982at 301.648 kb on - strand, within GFF982at 301.648 kb on - strand, within GFF982at 301.648 kb on - strand, within GFF982at 301.648 kb on - strand, within GFF982at 301.701 kb on + strand, within GFF982at 301.701 kb on + strand, within GFF982at 301.701 kb on + strand, within GFF982at 301.701 kb on + strand, within GFF982at 301.701 kb on + strand, within GFF982at 301.701 kb on + strand, within GFF982at 301.701 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.702 kb on - strand, within GFF982at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.979 kb on + strand, within GFF983at 301.980 kb on - strand, within GFF983at 301.980 kb on - strand, within GFF983at 301.980 kb on - strand, within GFF983at 301.980 kb on - strand, within GFF983at 301.980 kb on - strand, within GFF983at 301.980 kb on - strand, within GFF983at 301.980 kb on - strand, within GFF983at 302.020 kb on + strand, within GFF983at 302.326 kb on + strand, within GFF983at 302.506 kb on + strandat 302.506 kb on + strandat 302.507 kb on - strandat 302.582 kb on - strandat 302.662 kb on + strand, within GFF984at 302.662 kb on + strand, within GFF984at 302.662 kb on + strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.663 kb on - strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.695 kb on + strand, within GFF984at 302.696 kb on - strand, within GFF984at 302.696 kb on - strand, within GFF984at 302.696 kb on - strand, within GFF984at 302.696 kb on - strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.755 kb on + strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984at 302.756 kb on - strand, within GFF984

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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300,738 + -2.1
300,738 + +1.6
300,738 + -0.1
300,738 + -1.4
300,738 + -2.6
300,738 + -2.4
300,738 + +0.0
300,738 + -3.6
300,738 + -1.6
300,738 + -1.2
300,739 - -4.3
300,739 - -1.8
300,739 - -1.8
300,739 - +1.6
300,834 + GFF982 0.11 -1.2
300,834 + GFF982 0.11 -0.4
300,834 + GFF982 0.11 -2.7
300,834 + GFF982 0.11 -1.7
300,835 - GFF982 0.11 -1.4
300,835 - GFF982 0.11 -1.7
300,835 - GFF982 0.11 -0.7
300,835 - GFF982 0.11 -2.5
300,835 - GFF982 0.11 -0.4
300,835 - GFF982 0.11 -0.7
300,835 - GFF982 0.11 -1.8
300,835 - GFF982 0.11 -2.8
300,900 + GFF982 0.17 -1.2
300,900 + GFF982 0.17 -0.6
300,900 + GFF982 0.17 +0.6
300,900 + GFF982 0.17 -3.8
300,901 - GFF982 0.17 -1.2
300,901 - GFF982 0.17 -2.2
300,901 - GFF982 0.17 -1.6
300,901 - GFF982 0.17 +0.6
300,901 - GFF982 0.17 -2.9
300,901 - GFF982 0.17 -3.2
300,901 - GFF982 0.17 -2.7
300,901 - GFF982 0.17 -1.2
300,906 + GFF982 0.17 -0.4
300,906 + GFF982 0.17 -1.4
300,906 + GFF982 0.17 -3.0
300,906 + GFF982 0.17 -1.7
300,906 + GFF982 0.17 +0.9
300,906 + GFF982 0.17 -2.1
300,906 + GFF982 0.17 -1.7
300,906 + GFF982 0.17 -0.4
300,906 + GFF982 0.17 -2.8
300,906 + GFF982 0.17 -2.7
300,906 + GFF982 0.17 -1.2
300,906 + GFF982 0.17 -2.6
300,906 + GFF982 0.17 -4.4
300,906 + GFF982 0.17 -1.0
300,906 + GFF982 0.17 -1.0
300,906 + GFF982 0.17 -1.0
300,906 + GFF982 0.17 -2.4
300,906 + GFF982 0.17 +0.9
300,906 + GFF982 0.17 -3.7
300,906 + GFF982 0.17 -1.0
300,907 - GFF982 0.17 -4.2
300,907 - GFF982 0.17 -2.7
300,907 - GFF982 0.17 -2.2
300,907 - GFF982 0.17 -2.2
300,907 - GFF982 0.17 -2.3
300,907 - GFF982 0.17 -3.0
300,907 - GFF982 0.17 -3.2
300,907 - GFF982 0.17 -3.5
300,907 - GFF982 0.17 -3.2
300,907 - GFF982 0.17 -3.4
300,907 - GFF982 0.17 -1.4
300,907 - GFF982 0.17 -3.0
300,907 - GFF982 0.17 -2.1
300,907 - GFF982 0.17 -0.7
300,907 - GFF982 0.17 -2.8
300,907 - GFF982 0.17 -1.7
300,907 - GFF982 0.17 -4.1
300,907 - GFF982 0.17 -2.6
300,907 - GFF982 0.17 -3.6
300,907 - GFF982 0.17 -3.2
300,907 - GFF982 0.17 -0.7
300,907 - GFF982 0.17 -3.6
300,907 - GFF982 0.17 -1.6
300,907 - GFF982 0.17 -1.2
300,907 - GFF982 0.17 -2.4
300,907 - GFF982 0.17 +0.0
300,907 - GFF982 0.17 -1.6
300,907 - GFF982 0.17 -2.8
300,907 - GFF982 0.17 -2.8
300,907 - GFF982 0.17 -0.6
300,907 - GFF982 0.17 -0.6
300,907 - GFF982 0.17 -1.3
300,907 - GFF982 0.17 -3.2
300,907 - GFF982 0.17 -1.0
300,907 - GFF982 0.17 -2.4
301,086 + GFF982 0.34 +0.0
301,086 + GFF982 0.34 +0.6
301,086 + GFF982 0.34 -3.6
301,087 - GFF982 0.34 -0.3
301,087 - GFF982 0.34 -0.4
301,087 - GFF982 0.34 -2.7
301,222 - GFF982 0.46 -1.8
301,347 + GFF982 0.57 -1.2
301,347 + GFF982 0.57 -1.2
301,347 + GFF982 0.57 -2.8
301,347 + GFF982 0.57 -3.2
301,347 + GFF982 0.57 -1.4
301,347 + GFF982 0.57 -3.5
301,347 + GFF982 0.57 -2.1
301,347 + GFF982 0.57 -3.5
301,347 + GFF982 0.57 -1.8
301,347 + GFF982 0.57 -1.4
301,347 + GFF982 0.57 -3.1
301,347 + GFF982 0.57 -3.1
301,347 + GFF982 0.57 -0.7
301,347 + GFF982 0.57 -3.9
301,347 + GFF982 0.57 -1.4
301,347 + GFF982 0.57 -1.4
301,347 + GFF982 0.57 -4.7
301,347 + GFF982 0.57 -3.7
301,347 + GFF982 0.57 -2.6
301,347 + GFF982 0.57 -1.8
301,348 - GFF982 0.57 +0.0
301,348 - GFF982 0.57 -1.4
301,348 - GFF982 0.57 -1.0
301,348 - GFF982 0.57 -1.8
301,348 - GFF982 0.57 -0.7
301,348 - GFF982 0.57 -1.7
301,348 - GFF982 0.57 -0.4
301,348 - GFF982 0.57 -2.5
301,348 - GFF982 0.57 -0.7
301,348 - GFF982 0.57 +0.0
301,348 - GFF982 0.57 -0.1
301,348 - GFF982 0.57 -1.6
301,348 - GFF982 0.57 -2.2
301,348 - GFF982 0.57 -1.7
301,348 - GFF982 0.57 -1.0
301,348 - GFF982 0.57 -1.2
301,348 - GFF982 0.57 -1.6
301,348 - GFF982 0.57 -2.8
301,348 - GFF982 0.57 -1.2
301,348 - GFF982 0.57 -2.3
301,348 - GFF982 0.57 -2.0
301,440 - GFF982 0.66 -1.6
301,440 - GFF982 0.66 -3.8
301,536 + GFF982 0.74 -3.6
301,537 - GFF982 0.74 -4.0
301,647 + GFF982 0.84 -1.4
301,648 - GFF982 0.85 -1.0
301,648 - GFF982 0.85 -0.4
301,648 - GFF982 0.85 -2.4
301,648 - GFF982 0.85 -0.4
301,701 + GFF982 0.89 -1.2
301,701 + GFF982 0.89 -1.7
301,701 + GFF982 0.89 -2.8
301,701 + GFF982 0.89 -1.4
301,701 + GFF982 0.89 -2.1
301,701 + GFF982 0.89 -0.6
301,701 - GFF982 0.89 -1.6
301,702 - GFF982 0.89 +0.6
301,702 - GFF982 0.89 +0.6
301,702 - GFF982 0.89 -1.5
301,702 - GFF982 0.89 -1.4
301,702 - GFF982 0.89 -2.2
301,702 - GFF982 0.89 -2.9
301,702 - GFF982 0.89 -2.6
301,979 + GFF983 0.24 +0.9
301,979 + GFF983 0.24 +0.0
301,979 + GFF983 0.24 -0.4
301,979 + GFF983 0.24 +0.0
301,979 + GFF983 0.24 +0.8
301,979 + GFF983 0.24 -1.0
301,979 + GFF983 0.24 +1.6
301,979 + GFF983 0.24 -1.6
301,980 - GFF983 0.24 -0.4
301,980 - GFF983 0.24 -0.9
301,980 - GFF983 0.24 +0.0
301,980 - GFF983 0.24 -2.9
301,980 - GFF983 0.24 +0.6
301,980 - GFF983 0.24 -0.6
301,980 - GFF983 0.24 -1.0
302,020 + GFF983 0.30 -0.4
302,326 + GFF983 0.75 +0.8
302,506 + -0.5
302,506 + +0.4
302,507 - +1.6
302,582 - +0.0
302,662 + GFF984 0.18 +0.1
302,662 + GFF984 0.18 +1.2
302,662 + GFF984 0.18 +0.4
302,663 - GFF984 0.18 +1.3
302,663 - GFF984 0.18 +0.0
302,663 - GFF984 0.18 -1.3
302,663 - GFF984 0.18 -0.4
302,663 - GFF984 0.18 -2.6
302,663 - GFF984 0.18 -1.4
302,695 + GFF984 0.23 +2.5
302,695 + GFF984 0.23 -2.2
302,695 + GFF984 0.23 -1.0
302,695 + GFF984 0.23 +3.4
302,695 + GFF984 0.23 +1.1
302,695 + GFF984 0.23 +0.3
302,695 + GFF984 0.23 -1.4
302,695 + GFF984 0.23 -0.2
302,696 - GFF984 0.23 -1.6
302,696 - GFF984 0.23 +0.1
302,696 - GFF984 0.23 +0.6
302,696 - GFF984 0.23 -3.2
302,755 + GFF984 0.31 -3.1
302,755 + GFF984 0.31 +0.8
302,755 + GFF984 0.31 +1.1
302,755 + GFF984 0.31 +0.1
302,755 + GFF984 0.31 -2.6
302,755 + GFF984 0.31 +0.6
302,755 + GFF984 0.31 -0.2
302,755 + GFF984 0.31 -0.4
302,755 + GFF984 0.31 +0.7
302,755 + GFF984 0.31 -2.6
302,755 + GFF984 0.31 +0.0
302,755 + GFF984 0.31 -1.7
302,755 + GFF984 0.31 -0.8
302,755 + GFF984 0.31 +0.4
302,755 + GFF984 0.31 -2.5
302,755 + GFF984 0.31 +1.7
302,755 + GFF984 0.31 -0.4
302,755 + GFF984 0.31 +1.2
302,755 + GFF984 0.31 +0.4
302,756 - GFF984 0.31 +0.3
302,756 - GFF984 0.31 -2.1
302,756 - GFF984 0.31 -3.1
302,756 - GFF984 0.31 +0.1
302,756 - GFF984 0.31 +1.5
302,756 - GFF984 0.31 -2.2
302,756 - GFF984 0.31 -1.4
302,756 - GFF984 0.31 +1.3
302,756 - GFF984 0.31 -0.9
302,756 - GFF984 0.31 -0.1
302,756 - GFF984 0.31 +4.2
302,756 - GFF984 0.31 -2.1
302,756 - GFF984 0.31 +1.0
302,756 - GFF984 0.31 -0.1

Or see this region's nucleotide sequence