Strain Fitness in Variovorax sp. SCN45 around GFF936

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF934 and GFF935 are separated by 401 nucleotidesGFF935 and GFF936 are separated by 63 nucleotidesGFF936 and GFF937 overlap by 1 nucleotides GFF934 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3), at 247,107 to 248,651 GFF934 GFF935 - no description, at 249,053 to 249,244 GFF935 GFF936 - Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3), at 249,308 to 251,356 GFF936 GFF937 - Biotin synthase (EC 2.8.1.6), at 251,356 to 252,390 GFF937 Position (kb) 249 250 251 252Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 248.334 kb on + strand, within GFF934at 248.487 kb on + strand, within GFF934at 248.487 kb on + strand, within GFF934at 248.487 kb on + strand, within GFF934at 248.488 kb on - strand, within GFF934at 248.488 kb on - strand, within GFF934at 248.512 kb on - strandat 248.512 kb on - strandat 248.532 kb on + strandat 248.532 kb on + strandat 248.533 kb on - strandat 248.533 kb on - strandat 248.784 kb on + strandat 248.784 kb on + strandat 248.785 kb on - strandat 248.785 kb on - strandat 248.785 kb on - strandat 248.785 kb on - strandat 248.785 kb on - strandat 248.833 kb on + strandat 248.885 kb on + strandat 248.885 kb on + strandat 248.885 kb on + strandat 248.885 kb on + strandat 248.886 kb on - strandat 248.886 kb on - strandat 248.886 kb on - strandat 248.886 kb on - strandat 249.001 kb on + strandat 249.002 kb on - strandat 249.002 kb on - strandat 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.133 kb on + strand, within GFF935at 249.133 kb on + strand, within GFF935at 249.134 kb on - strand, within GFF935at 249.134 kb on - strand, within GFF935at 249.155 kb on + strand, within GFF935at 249.156 kb on - strand, within GFF935at 249.156 kb on - strand, within GFF935at 249.161 kb on + strand, within GFF935at 249.161 kb on + strand, within GFF935at 249.177 kb on - strand, within GFF935at 249.242 kb on + strandat 249.243 kb on - strandat 249.243 kb on - strandat 249.271 kb on + strandat 249.271 kb on + strandat 249.271 kb on + strandat 249.271 kb on + strandat 249.271 kb on + strandat 249.272 kb on - strandat 249.272 kb on - strandat 249.272 kb on - strandat 249.301 kb on - strandat 249.485 kb on + strandat 249.485 kb on + strandat 249.485 kb on + strandat 249.485 kb on + strandat 249.486 kb on - strandat 249.486 kb on - strandat 249.486 kb on - strandat 249.629 kb on + strand, within GFF936at 249.850 kb on + strand, within GFF936at 249.850 kb on + strand, within GFF936at 249.851 kb on - strand, within GFF936at 249.851 kb on - strand, within GFF936at 249.851 kb on - strand, within GFF936at 249.974 kb on + strand, within GFF936at 249.974 kb on + strand, within GFF936at 249.974 kb on + strand, within GFF936at 249.975 kb on - strand, within GFF936at 250.109 kb on + strand, within GFF936at 250.110 kb on - strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.478 kb on + strand, within GFF936at 250.479 kb on - strand, within GFF936at 250.479 kb on - strand, within GFF936at 250.479 kb on - strand, within GFF936at 250.739 kb on + strand, within GFF936at 250.739 kb on + strand, within GFF936at 250.739 kb on + strand, within GFF936at 250.740 kb on - strand, within GFF936at 250.740 kb on - strand, within GFF936at 250.740 kb on - strand, within GFF936at 250.740 kb on - strand, within GFF936at 250.931 kb on + strand, within GFF936at 250.932 kb on - strand, within GFF936at 251.123 kb on + strand, within GFF936at 251.123 kb on + strand, within GFF936at 251.123 kb on + strand, within GFF936at 251.124 kb on - strand, within GFF936at 251.861 kb on - strand, within GFF937at 251.861 kb on - strand, within GFF937at 251.861 kb on - strand, within GFF937at 251.861 kb on - strand, within GFF937at 251.863 kb on + strand, within GFF937at 251.863 kb on + strand, within GFF937at 251.863 kb on + strand, within GFF937at 251.863 kb on + strand, within GFF937at 251.863 kb on + strand, within GFF937at 251.864 kb on - strand, within GFF937at 251.864 kb on - strand, within GFF937at 251.864 kb on - strand, within GFF937at 251.864 kb on - strand, within GFF937at 251.864 kb on - strand, within GFF937at 251.864 kb on - strand, within GFF937at 251.894 kb on - strand, within GFF937at 251.894 kb on - strand, within GFF937at 251.894 kb on - strand, within GFF937at 251.896 kb on + strand, within GFF937at 251.896 kb on + strand, within GFF937at 251.896 kb on + strand, within GFF937at 251.896 kb on + strand, within GFF937at 251.897 kb on - strand, within GFF937at 251.897 kb on - strand, within GFF937at 251.897 kb on - strand, within GFF937at 251.897 kb on - strand, within GFF937at 251.923 kb on + strand, within GFF937at 251.923 kb on + strand, within GFF937at 251.924 kb on - strand, within GFF937at 251.924 kb on - strand, within GFF937at 251.924 kb on - strand, within GFF937at 251.924 kb on - strand, within GFF937at 252.271 kb on + strand, within GFF937at 252.272 kb on - strand, within GFF937

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
248,334 + GFF934 0.79 -1.5
248,487 + GFF934 0.89 -1.2
248,487 + GFF934 0.89 -0.9
248,487 + GFF934 0.89 -1.8
248,488 - GFF934 0.89 -1.2
248,488 - GFF934 0.89 -3.1
248,512 - -1.4
248,512 - -3.5
248,532 + -0.4
248,532 + -4.1
248,533 - -2.3
248,533 - -4.5
248,784 + +1.6
248,784 + +0.1
248,785 - -0.2
248,785 - -2.1
248,785 - -0.8
248,785 - -1.1
248,785 - +0.5
248,833 + -0.4
248,885 + -0.7
248,885 + +0.9
248,885 + -0.4
248,885 + -3.4
248,886 - +0.5
248,886 - +0.9
248,886 - -0.5
248,886 - -2.4
249,001 + +1.1
249,002 - -0.1
249,002 - -0.9
249,101 + GFF935 0.25 +1.4
249,101 + GFF935 0.25 -0.1
249,101 + GFF935 0.25 +0.5
249,101 + GFF935 0.25 -2.1
249,101 + GFF935 0.25 -1.2
249,101 + GFF935 0.25 +0.1
249,102 - GFF935 0.26 -0.2
249,102 - GFF935 0.26 -0.2
249,102 - GFF935 0.26 -0.4
249,102 - GFF935 0.26 -0.9
249,102 - GFF935 0.26 -0.1
249,133 + GFF935 0.42 -0.5
249,133 + GFF935 0.42 +0.2
249,134 - GFF935 0.42 -1.2
249,134 - GFF935 0.42 -0.9
249,155 + GFF935 0.53 +0.5
249,156 - GFF935 0.54 -1.0
249,156 - GFF935 0.54 +0.1
249,161 + GFF935 0.56 -0.8
249,161 + GFF935 0.56 +0.9
249,177 - GFF935 0.65 -1.4
249,242 + +1.1
249,243 - -1.9
249,243 - +0.4
249,271 + +1.1
249,271 + -0.1
249,271 + -0.9
249,271 + -2.9
249,271 + +1.1
249,272 - -1.2
249,272 - -0.4
249,272 - -3.1
249,301 - -1.5
249,485 + -2.6
249,485 + -3.4
249,485 + -3.2
249,485 + -3.4
249,486 - -2.3
249,486 - -4.0
249,486 - -3.7
249,629 + GFF936 0.16 -4.1
249,850 + GFF936 0.26 -3.3
249,850 + GFF936 0.26 -3.0
249,851 - GFF936 0.27 -4.8
249,851 - GFF936 0.27 -1.7
249,851 - GFF936 0.27 -3.5
249,974 + GFF936 0.33 -2.8
249,974 + GFF936 0.33 -3.8
249,974 + GFF936 0.33 +0.1
249,975 - GFF936 0.33 -1.7
250,109 + GFF936 0.39 -1.4
250,110 - GFF936 0.39 -2.7
250,478 + GFF936 0.57 -1.4
250,478 + GFF936 0.57 -3.1
250,478 + GFF936 0.57 -2.8
250,478 + GFF936 0.57 -0.7
250,478 + GFF936 0.57 -3.3
250,478 + GFF936 0.57 -2.9
250,478 + GFF936 0.57 -3.9
250,479 - GFF936 0.57 -3.5
250,479 - GFF936 0.57 -2.3
250,479 - GFF936 0.57 -4.0
250,739 + GFF936 0.70 -0.4
250,739 + GFF936 0.70 -2.8
250,739 + GFF936 0.70 -2.6
250,740 - GFF936 0.70 -2.9
250,740 - GFF936 0.70 -5.1
250,740 - GFF936 0.70 -2.3
250,740 - GFF936 0.70 -4.4
250,931 + GFF936 0.79 -0.7
250,932 - GFF936 0.79 -3.6
251,123 + GFF936 0.89 -4.6
251,123 + GFF936 0.89 -0.4
251,123 + GFF936 0.89 -2.9
251,124 - GFF936 0.89 -0.9
251,861 - GFF937 0.49 -1.7
251,861 - GFF937 0.49 +1.5
251,861 - GFF937 0.49 -1.0
251,861 - GFF937 0.49 -3.9
251,863 + GFF937 0.49 -2.4
251,863 + GFF937 0.49 -0.2
251,863 + GFF937 0.49 -1.3
251,863 + GFF937 0.49 +1.6
251,863 + GFF937 0.49 -1.2
251,864 - GFF937 0.49 +0.1
251,864 - GFF937 0.49 -2.9
251,864 - GFF937 0.49 -1.2
251,864 - GFF937 0.49 -3.1
251,864 - GFF937 0.49 -0.9
251,864 - GFF937 0.49 +0.6
251,894 - GFF937 0.52 -1.2
251,894 - GFF937 0.52 +0.1
251,894 - GFF937 0.52 +0.1
251,896 + GFF937 0.52 -2.1
251,896 + GFF937 0.52 +0.6
251,896 + GFF937 0.52 +1.1
251,896 + GFF937 0.52 -0.4
251,897 - GFF937 0.52 +0.9
251,897 - GFF937 0.52 -0.0
251,897 - GFF937 0.52 -2.8
251,897 - GFF937 0.52 -0.6
251,923 + GFF937 0.55 +1.0
251,923 + GFF937 0.55 +0.1
251,924 - GFF937 0.55 -0.9
251,924 - GFF937 0.55 -4.3
251,924 - GFF937 0.55 -0.5
251,924 - GFF937 0.55 -1.5
252,271 + GFF937 0.88 -1.7
252,272 - GFF937 0.89 -0.4

Or see this region's nucleotide sequence