Strain Fitness in Variovorax sp. SCN45 around GFF934

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF933 and GFF934 are separated by 37 nucleotidesGFF934 and GFF935 are separated by 401 nucleotidesGFF935 and GFF936 are separated by 63 nucleotides GFF933 - YgfD: protein that forms a complex with the methylmalonyl-CoA mutase in a pathway for conversion of succinyl-CoA to propionyl-CoA, at 246,020 to 247,069 GFF933 GFF934 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3), at 247,107 to 248,651 GFF934 GFF935 - no description, at 249,053 to 249,244 GFF935 GFF936 - Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3), at 249,308 to 251,356 GFF936 Position (kb) 247 248 249Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 246.377 kb on + strand, within GFF933at 246.377 kb on + strand, within GFF933at 246.378 kb on - strand, within GFF933at 246.381 kb on + strand, within GFF933at 246.381 kb on + strand, within GFF933at 246.381 kb on + strand, within GFF933at 246.381 kb on + strand, within GFF933at 246.382 kb on - strand, within GFF933at 246.382 kb on - strand, within GFF933at 246.382 kb on - strand, within GFF933at 246.382 kb on - strand, within GFF933at 246.382 kb on - strand, within GFF933at 247.338 kb on + strand, within GFF934at 247.624 kb on - strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.671 kb on + strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.672 kb on - strand, within GFF934at 247.830 kb on + strand, within GFF934at 247.831 kb on - strand, within GFF934at 247.831 kb on - strand, within GFF934at 247.836 kb on + strand, within GFF934at 247.837 kb on - strand, within GFF934at 247.837 kb on - strand, within GFF934at 247.837 kb on - strand, within GFF934at 247.837 kb on - strand, within GFF934at 247.918 kb on - strand, within GFF934at 247.960 kb on - strand, within GFF934at 247.960 kb on - strand, within GFF934at 248.026 kb on - strand, within GFF934at 248.173 kb on - strand, within GFF934at 248.232 kb on + strand, within GFF934at 248.232 kb on + strand, within GFF934at 248.232 kb on + strand, within GFF934at 248.233 kb on - strand, within GFF934at 248.274 kb on + strand, within GFF934at 248.274 kb on + strand, within GFF934at 248.274 kb on + strand, within GFF934at 248.275 kb on - strand, within GFF934at 248.275 kb on - strand, within GFF934at 248.334 kb on + strand, within GFF934at 248.487 kb on + strand, within GFF934at 248.487 kb on + strand, within GFF934at 248.487 kb on + strand, within GFF934at 248.488 kb on - strand, within GFF934at 248.488 kb on - strand, within GFF934at 248.512 kb on - strandat 248.512 kb on - strandat 248.532 kb on + strandat 248.532 kb on + strandat 248.533 kb on - strandat 248.533 kb on - strandat 248.784 kb on + strandat 248.784 kb on + strandat 248.785 kb on - strandat 248.785 kb on - strandat 248.785 kb on - strandat 248.785 kb on - strandat 248.785 kb on - strandat 248.833 kb on + strandat 248.885 kb on + strandat 248.885 kb on + strandat 248.885 kb on + strandat 248.885 kb on + strandat 248.886 kb on - strandat 248.886 kb on - strandat 248.886 kb on - strandat 248.886 kb on - strandat 249.001 kb on + strandat 249.002 kb on - strandat 249.002 kb on - strandat 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.101 kb on + strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.102 kb on - strand, within GFF935at 249.133 kb on + strand, within GFF935at 249.133 kb on + strand, within GFF935at 249.134 kb on - strand, within GFF935at 249.134 kb on - strand, within GFF935at 249.155 kb on + strand, within GFF935at 249.156 kb on - strand, within GFF935at 249.156 kb on - strand, within GFF935at 249.161 kb on + strand, within GFF935at 249.161 kb on + strand, within GFF935at 249.177 kb on - strand, within GFF935at 249.242 kb on + strandat 249.243 kb on - strandat 249.243 kb on - strandat 249.271 kb on + strandat 249.271 kb on + strandat 249.271 kb on + strandat 249.271 kb on + strandat 249.271 kb on + strandat 249.272 kb on - strandat 249.272 kb on - strandat 249.272 kb on - strandat 249.301 kb on - strandat 249.485 kb on + strandat 249.485 kb on + strandat 249.485 kb on + strandat 249.485 kb on + strandat 249.486 kb on - strandat 249.486 kb on - strandat 249.486 kb on - strandat 249.629 kb on + strand, within GFF936

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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246,377 + GFF933 0.34 -0.7
246,377 + GFF933 0.34 +0.9
246,378 - GFF933 0.34 -2.3
246,381 + GFF933 0.34 -1.5
246,381 + GFF933 0.34 -1.5
246,381 + GFF933 0.34 -1.6
246,381 + GFF933 0.34 -1.2
246,382 - GFF933 0.34 +1.2
246,382 - GFF933 0.34 -0.1
246,382 - GFF933 0.34 +1.6
246,382 - GFF933 0.34 -3.5
246,382 - GFF933 0.34 -1.8
247,338 + GFF934 0.15 -2.6
247,624 - GFF934 0.33 -3.1
247,671 + GFF934 0.37 -2.1
247,671 + GFF934 0.37 -3.6
247,671 + GFF934 0.37 -1.9
247,671 + GFF934 0.37 -5.1
247,671 + GFF934 0.37 -1.2
247,671 + GFF934 0.37 -2.5
247,671 + GFF934 0.37 -1.4
247,672 - GFF934 0.37 -1.5
247,672 - GFF934 0.37 -1.7
247,672 - GFF934 0.37 -2.5
247,672 - GFF934 0.37 -2.1
247,672 - GFF934 0.37 -2.8
247,672 - GFF934 0.37 -0.9
247,672 - GFF934 0.37 +1.6
247,672 - GFF934 0.37 -3.9
247,672 - GFF934 0.37 -3.5
247,672 - GFF934 0.37 -0.7
247,672 - GFF934 0.37 -2.4
247,672 - GFF934 0.37 -2.2
247,830 + GFF934 0.47 -3.5
247,831 - GFF934 0.47 -4.2
247,831 - GFF934 0.47 -4.6
247,836 + GFF934 0.47 -1.9
247,837 - GFF934 0.47 -3.5
247,837 - GFF934 0.47 -2.2
247,837 - GFF934 0.47 -2.9
247,837 - GFF934 0.47 -2.9
247,918 - GFF934 0.52 -2.4
247,960 - GFF934 0.55 -5.0
247,960 - GFF934 0.55 -3.3
248,026 - GFF934 0.59 -3.1
248,173 - GFF934 0.69 -1.2
248,232 + GFF934 0.73 -0.4
248,232 + GFF934 0.73 +1.6
248,232 + GFF934 0.73 -2.7
248,233 - GFF934 0.73 -2.7
248,274 + GFF934 0.76 +0.1
248,274 + GFF934 0.76 -3.3
248,274 + GFF934 0.76 -4.0
248,275 - GFF934 0.76 -3.8
248,275 - GFF934 0.76 -1.2
248,334 + GFF934 0.79 -1.5
248,487 + GFF934 0.89 -1.2
248,487 + GFF934 0.89 -0.9
248,487 + GFF934 0.89 -1.8
248,488 - GFF934 0.89 -1.2
248,488 - GFF934 0.89 -3.1
248,512 - -1.4
248,512 - -3.5
248,532 + -0.4
248,532 + -4.1
248,533 - -2.3
248,533 - -4.5
248,784 + +1.6
248,784 + +0.1
248,785 - -0.2
248,785 - -2.1
248,785 - -0.8
248,785 - -1.1
248,785 - +0.5
248,833 + -0.4
248,885 + -0.7
248,885 + +0.9
248,885 + -0.4
248,885 + -3.4
248,886 - +0.5
248,886 - +0.9
248,886 - -0.5
248,886 - -2.4
249,001 + +1.1
249,002 - -0.1
249,002 - -0.9
249,101 + GFF935 0.25 +1.4
249,101 + GFF935 0.25 -0.1
249,101 + GFF935 0.25 +0.5
249,101 + GFF935 0.25 -2.1
249,101 + GFF935 0.25 -1.2
249,101 + GFF935 0.25 +0.1
249,102 - GFF935 0.26 -0.2
249,102 - GFF935 0.26 -0.2
249,102 - GFF935 0.26 -0.4
249,102 - GFF935 0.26 -0.9
249,102 - GFF935 0.26 -0.1
249,133 + GFF935 0.42 -0.5
249,133 + GFF935 0.42 +0.2
249,134 - GFF935 0.42 -1.2
249,134 - GFF935 0.42 -0.9
249,155 + GFF935 0.53 +0.5
249,156 - GFF935 0.54 -1.0
249,156 - GFF935 0.54 +0.1
249,161 + GFF935 0.56 -0.8
249,161 + GFF935 0.56 +0.9
249,177 - GFF935 0.65 -1.4
249,242 + +1.1
249,243 - -1.9
249,243 - +0.4
249,271 + +1.1
249,271 + -0.1
249,271 + -0.9
249,271 + -2.9
249,271 + +1.1
249,272 - -1.2
249,272 - -0.4
249,272 - -3.1
249,301 - -1.5
249,485 + -2.6
249,485 + -3.4
249,485 + -3.2
249,485 + -3.4
249,486 - -2.3
249,486 - -4.0
249,486 - -3.7
249,629 + GFF936 0.16 -4.1

Or see this region's nucleotide sequence