Strain Fitness in Variovorax sp. SCN45 around GFF924

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF922 and GFF923 are separated by 177 nucleotidesGFF923 and GFF924 are separated by 100 nucleotidesGFF924 and GFF925 are separated by 70 nucleotidesGFF925 and GFF926 are separated by 46 nucleotides GFF922 - hypothetical protein, at 235,354 to 235,749 GFF922 GFF923 - Chromosome partition protein smc, at 235,927 to 236,310 GFF923 GFF924 - hypothetical protein, at 236,411 to 237,208 GFF924 GFF925 - hypothetical protein, at 237,279 to 238,058 GFF925 GFF926 - Transcriptional regulator, AcrR family, at 238,105 to 238,785 GFF926 Position (kb) 236 237 238Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 235.425 kb on - strand, within GFF922at 235.425 kb on - strand, within GFF922at 235.425 kb on - strand, within GFF922at 235.460 kb on + strand, within GFF922at 235.460 kb on + strand, within GFF922at 235.521 kb on - strand, within GFF922at 235.554 kb on + strand, within GFF922at 235.562 kb on + strand, within GFF922at 235.562 kb on + strand, within GFF922at 235.562 kb on + strand, within GFF922at 235.562 kb on + strand, within GFF922at 235.563 kb on - strand, within GFF922at 235.563 kb on - strand, within GFF922at 235.798 kb on + strandat 235.799 kb on - strandat 235.799 kb on - strandat 235.851 kb on + strandat 235.852 kb on - strandat 235.852 kb on - strandat 235.860 kb on + strandat 235.860 kb on + strandat 235.861 kb on - strandat 235.861 kb on - strandat 235.861 kb on - strandat 235.861 kb on - strandat 235.861 kb on - strandat 236.254 kb on + strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.308 kb on + strandat 236.309 kb on - strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.377 kb on + strandat 236.495 kb on + strand, within GFF924at 236.495 kb on + strand, within GFF924at 236.496 kb on - strand, within GFF924at 236.654 kb on + strand, within GFF924at 236.654 kb on + strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.726 kb on + strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.741 kb on + strand, within GFF924at 236.741 kb on + strand, within GFF924at 236.742 kb on - strand, within GFF924at 237.225 kb on - strandat 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.507 kb on + strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.508 kb on - strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.868 kb on - strand, within GFF925at 237.868 kb on - strand, within GFF925at 237.868 kb on - strand, within GFF925at 237.868 kb on - strand, within GFF925at 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.111 kb on + strandat 238.112 kb on - strandat 238.112 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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235,425 - GFF922 0.18 -3.3
235,425 - GFF922 0.18 -1.2
235,425 - GFF922 0.18 -0.3
235,460 + GFF922 0.27 +1.1
235,460 + GFF922 0.27 -2.3
235,521 - GFF922 0.42 +1.7
235,554 + GFF922 0.51 -0.7
235,562 + GFF922 0.53 -0.3
235,562 + GFF922 0.53 -1.3
235,562 + GFF922 0.53 -1.0
235,562 + GFF922 0.53 +0.4
235,563 - GFF922 0.53 +2.0
235,563 - GFF922 0.53 -1.2
235,798 + +0.8
235,799 - +0.1
235,799 - -2.3
235,851 + +1.8
235,852 - +0.3
235,852 - -0.7
235,860 + +0.7
235,860 + -2.6
235,861 - +0.1
235,861 - +0.7
235,861 - -1.8
235,861 - -1.5
235,861 - -0.5
236,254 + GFF923 0.85 -2.7
236,255 - GFF923 0.85 -0.7
236,255 - GFF923 0.85 -1.2
236,255 - GFF923 0.85 +1.1
236,255 - GFF923 0.85 -1.5
236,255 - GFF923 0.85 +1.1
236,255 - GFF923 0.85 -1.3
236,308 + +0.8
236,309 - +0.1
236,350 + +1.7
236,350 + -0.7
236,350 + -0.3
236,350 + -0.5
236,350 + -2.2
236,350 + +1.1
236,350 + -0.2
236,351 - +2.4
236,351 - -0.3
236,351 - +1.7
236,351 - -1.3
236,351 - -0.4
236,351 - -0.2
236,377 + -1.0
236,495 + GFF924 0.11 -2.9
236,495 + GFF924 0.11 +1.6
236,496 - GFF924 0.11 +0.0
236,654 + GFF924 0.30 +0.3
236,654 + GFF924 0.30 +0.6
236,655 - GFF924 0.31 +0.1
236,655 - GFF924 0.31 -3.9
236,655 - GFF924 0.31 -0.4
236,655 - GFF924 0.31 -0.9
236,655 - GFF924 0.31 -0.2
236,655 - GFF924 0.31 -2.6
236,655 - GFF924 0.31 +1.7
236,726 + GFF924 0.39 +1.0
236,727 - GFF924 0.40 +1.5
236,727 - GFF924 0.40 +0.0
236,727 - GFF924 0.40 -1.5
236,727 - GFF924 0.40 -1.0
236,727 - GFF924 0.40 -0.7
236,741 + GFF924 0.41 -0.5
236,741 + GFF924 0.41 -0.1
236,742 - GFF924 0.41 +2.5
237,225 - -0.7
237,507 + GFF925 0.29 -0.4
237,507 + GFF925 0.29 +0.4
237,507 + GFF925 0.29 -0.2
237,507 + GFF925 0.29 -2.3
237,507 + GFF925 0.29 -1.2
237,507 + GFF925 0.29 +0.8
237,507 + GFF925 0.29 +2.1
237,507 + GFF925 0.29 -0.6
237,507 + GFF925 0.29 -0.4
237,507 + GFF925 0.29 -0.0
237,507 + GFF925 0.29 +0.3
237,507 + GFF925 0.29 +1.3
237,507 + GFF925 0.29 -4.0
237,508 - GFF925 0.29 -0.8
237,508 - GFF925 0.29 -2.3
237,508 - GFF925 0.29 +0.1
237,508 - GFF925 0.29 -1.2
237,508 - GFF925 0.29 +0.1
237,508 - GFF925 0.29 -2.3
237,508 - GFF925 0.29 -3.2
237,508 - GFF925 0.29 -2.3
237,508 - GFF925 0.29 +1.2
237,508 - GFF925 0.29 -2.3
237,508 - GFF925 0.29 -0.2
237,508 - GFF925 0.29 +1.5
237,867 + GFF925 0.75 -0.8
237,867 + GFF925 0.75 +2.1
237,867 + GFF925 0.75 +0.5
237,867 + GFF925 0.75 -0.8
237,867 + GFF925 0.75 +0.0
237,868 - GFF925 0.76 -1.5
237,868 - GFF925 0.76 -0.2
237,868 - GFF925 0.76 -1.2
237,868 - GFF925 0.76 -0.3
238,014 + -3.1
238,014 + +0.4
238,014 + +0.4
238,014 + -1.1
238,014 + -2.0
238,014 + -0.0
238,014 + +2.5
238,014 + +1.8
238,014 + -0.7
238,014 + -0.5
238,014 + -1.3
238,014 + +0.2
238,014 + -2.7
238,014 + -1.7
238,014 + -2.3
238,014 + +0.5
238,014 + -1.2
238,014 + -3.7
238,015 - -2.5
238,015 - -2.3
238,015 - -1.2
238,015 - +3.0
238,015 - -2.2
238,015 - -1.6
238,015 - +2.5
238,015 - -0.9
238,015 - +0.8
238,015 - -0.3
238,015 - +0.3
238,015 - +0.6
238,015 - -3.6
238,111 + +0.1
238,112 - -1.3
238,112 - -0.7

Or see this region's nucleotide sequence