Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF86 and GFF87 overlap by 4 nucleotides GFF87 and GFF88 are separated by 7 nucleotides GFF88 and GFF89 are separated by 5 nucleotides
GFF86 - Cell morphology protein, at 102,517 to 103,191
GFF86
GFF87 - no description, at 103,188 to 103,868
GFF87
GFF88 - Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-), at 103,876 to 105,270
GFF88
GFF89 - hypothetical protein, at 105,276 to 106,388
GFF89
Position (kb) 103
104
105
106 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 102.968 kb on - strand, within GFF86 at 102.980 kb on - strand, within GFF86 at 102.980 kb on - strand, within GFF86 at 103.273 kb on - strand, within GFF87 at 103.273 kb on - strand, within GFF87 at 103.405 kb on - strand, within GFF87 at 103.602 kb on + strand, within GFF87 at 103.602 kb on + strand, within GFF87 at 103.603 kb on - strand, within GFF87 at 103.603 kb on - strand, within GFF87 at 103.603 kb on - strand, within GFF87 at 103.934 kb on - strand at 103.934 kb on - strand at 103.934 kb on - strand at 103.993 kb on + strand at 103.993 kb on + strand at 103.994 kb on - strand at 103.994 kb on - strand at 103.994 kb on - strand at 103.994 kb on - strand at 103.994 kb on - strand at 104.138 kb on + strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.139 kb on - strand, within GFF88 at 104.150 kb on - strand, within GFF88 at 104.272 kb on + strand, within GFF88 at 104.272 kb on + strand, within GFF88 at 104.272 kb on + strand, within GFF88 at 104.273 kb on - strand, within GFF88 at 104.273 kb on - strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.569 kb on + strand, within GFF88 at 104.570 kb on - strand, within GFF88 at 104.570 kb on - strand, within GFF88 at 104.604 kb on + strand, within GFF88 at 104.604 kb on + strand, within GFF88 at 104.712 kb on + strand, within GFF88 at 104.712 kb on + strand, within GFF88 at 104.712 kb on + strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.740 kb on + strand, within GFF88 at 104.741 kb on - strand, within GFF88 at 104.741 kb on - strand, within GFF88 at 104.746 kb on + strand, within GFF88 at 104.857 kb on + strand, within GFF88 at 104.943 kb on + strand, within GFF88 at 105.100 kb on + strand, within GFF88 at 105.100 kb on + strand, within GFF88 at 105.101 kb on - strand, within GFF88 at 105.256 kb on + strand at 105.256 kb on + strand at 105.257 kb on - strand at 105.432 kb on - strand, within GFF89 at 105.710 kb on + strand, within GFF89
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 102,968 - GFF86 0.67 +1.5 102,980 - GFF86 0.69 -2.0 102,980 - GFF86 0.69 -2.3 103,273 - GFF87 0.12 -0.8 103,273 - GFF87 0.12 +1.3 103,405 - GFF87 0.32 +0.5 103,602 + GFF87 0.61 +0.8 103,602 + GFF87 0.61 -0.3 103,603 - GFF87 0.61 -1.0 103,603 - GFF87 0.61 -1.2 103,603 - GFF87 0.61 +2.0 103,934 - -0.0 103,934 - -2.5 103,934 - -0.0 103,993 + +0.7 103,993 + +2.1 103,994 - -2.3 103,994 - -1.9 103,994 - -1.9 103,994 - -0.8 103,994 - -1.6 104,138 + GFF88 0.19 -3.1 104,139 - GFF88 0.19 -2.4 104,139 - GFF88 0.19 -1.0 104,139 - GFF88 0.19 +0.9 104,139 - GFF88 0.19 -1.8 104,139 - GFF88 0.19 -0.9 104,139 - GFF88 0.19 -3.2 104,139 - GFF88 0.19 -0.7 104,150 - GFF88 0.20 +0.3 104,272 + GFF88 0.28 +0.3 104,272 + GFF88 0.28 -0.7 104,272 + GFF88 0.28 -0.4 104,273 - GFF88 0.28 -0.0 104,273 - GFF88 0.28 -1.6 104,335 + GFF88 0.33 +0.7 104,335 + GFF88 0.33 -2.6 104,335 + GFF88 0.33 +0.9 104,335 + GFF88 0.33 +1.3 104,336 - GFF88 0.33 +0.3 104,336 - GFF88 0.33 -1.5 104,336 - GFF88 0.33 -0.2 104,336 - GFF88 0.33 +1.0 104,569 + GFF88 0.50 -2.3 104,570 - GFF88 0.50 +1.0 104,570 - GFF88 0.50 +0.7 104,604 + GFF88 0.52 +1.1 104,604 + GFF88 0.52 +1.2 104,712 + GFF88 0.60 -0.5 104,712 + GFF88 0.60 +1.3 104,712 + GFF88 0.60 -1.0 104,713 - GFF88 0.60 -0.3 104,713 - GFF88 0.60 -0.0 104,713 - GFF88 0.60 -2.0 104,713 - GFF88 0.60 +0.5 104,740 + GFF88 0.62 -0.5 104,741 - GFF88 0.62 -0.8 104,741 - GFF88 0.62 +0.2 104,746 + GFF88 0.62 -0.6 104,857 + GFF88 0.70 +1.1 104,943 + GFF88 0.76 -4.4 105,100 + GFF88 0.88 -1.9 105,100 + GFF88 0.88 -0.8 105,101 - GFF88 0.88 -3.3 105,256 + -0.0 105,256 + -1.5 105,257 - -1.8 105,432 - GFF89 0.14 +1.5 105,710 + GFF89 0.39 -0.8
Or see this region's nucleotide sequence