Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF876 and GFF877 overlap by 4 nucleotides GFF877 and GFF878 are separated by 112 nucleotides GFF878 and GFF879 are separated by 228 nucleotides
GFF876 - hypothetical protein, at 184,848 to 186,509
GFF876
GFF877 - putative membrane protein, at 186,506 to 187,498
GFF877
GFF878 - COGs COG2343, at 187,611 to 188,000
GFF878
GFF879 - BUG/TctC family periplasmic protein, at 188,229 to 189,305
GFF879
Position (kb) 186
187
188 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 185.680 kb on + strand, within GFF876 at 185.681 kb on - strand, within GFF876 at 186.307 kb on + strand, within GFF876 at 186.307 kb on + strand, within GFF876 at 186.307 kb on + strand, within GFF876 at 186.308 kb on - strand, within GFF876 at 186.308 kb on - strand, within GFF876 at 186.308 kb on - strand, within GFF876 at 186.308 kb on - strand, within GFF876 at 186.308 kb on - strand, within GFF876 at 186.308 kb on - strand, within GFF876 at 186.787 kb on - strand, within GFF877 at 187.011 kb on + strand, within GFF877 at 187.012 kb on - strand, within GFF877 at 187.150 kb on - strand, within GFF877 at 187.161 kb on + strand, within GFF877 at 187.162 kb on - strand, within GFF877 at 187.162 kb on - strand, within GFF877 at 187.388 kb on + strand, within GFF877 at 187.476 kb on + strand at 187.476 kb on + strand at 187.651 kb on + strand, within GFF878 at 187.691 kb on - strand, within GFF878 at 187.702 kb on + strand, within GFF878 at 187.702 kb on + strand, within GFF878 at 187.703 kb on - strand, within GFF878 at 187.750 kb on + strand, within GFF878 at 187.750 kb on + strand, within GFF878 at 187.751 kb on - strand, within GFF878 at 187.751 kb on - strand, within GFF878 at 187.753 kb on + strand, within GFF878 at 187.754 kb on - strand, within GFF878 at 187.754 kb on - strand, within GFF878 at 187.771 kb on + strand, within GFF878 at 187.772 kb on - strand, within GFF878 at 187.772 kb on - strand, within GFF878 at 187.780 kb on + strand, within GFF878 at 187.780 kb on + strand, within GFF878 at 187.781 kb on - strand, within GFF878 at 187.837 kb on + strand, within GFF878 at 187.837 kb on + strand, within GFF878 at 187.837 kb on + strand, within GFF878 at 187.837 kb on + strand, within GFF878 at 187.837 kb on + strand, within GFF878 at 187.838 kb on - strand, within GFF878 at 187.838 kb on - strand, within GFF878 at 187.838 kb on - strand, within GFF878 at 187.838 kb on - strand, within GFF878 at 188.212 kb on + strand at 188.212 kb on + strand at 188.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 185,680 + GFF876 0.50 +2.0 185,681 - GFF876 0.50 +2.4 186,307 + GFF876 0.88 +2.0 186,307 + GFF876 0.88 +0.7 186,307 + GFF876 0.88 -0.2 186,308 - GFF876 0.88 -0.7 186,308 - GFF876 0.88 +0.3 186,308 - GFF876 0.88 +0.1 186,308 - GFF876 0.88 -2.1 186,308 - GFF876 0.88 -0.8 186,308 - GFF876 0.88 +0.8 186,787 - GFF877 0.28 +0.1 187,011 + GFF877 0.51 -0.3 187,012 - GFF877 0.51 -1.4 187,150 - GFF877 0.65 -0.9 187,161 + GFF877 0.66 +1.7 187,162 - GFF877 0.66 -0.6 187,162 - GFF877 0.66 -0.3 187,388 + GFF877 0.89 -3.2 187,476 + +0.2 187,476 + +1.6 187,651 + GFF878 0.10 +0.6 187,691 - GFF878 0.21 -0.4 187,702 + GFF878 0.23 +3.7 187,702 + GFF878 0.23 -0.5 187,703 - GFF878 0.24 -0.3 187,750 + GFF878 0.36 -3.4 187,750 + GFF878 0.36 +0.7 187,751 - GFF878 0.36 -2.2 187,751 - GFF878 0.36 -2.8 187,753 + GFF878 0.36 -1.5 187,754 - GFF878 0.37 -2.8 187,754 - GFF878 0.37 -1.9 187,771 + GFF878 0.41 +0.4 187,772 - GFF878 0.41 -2.6 187,772 - GFF878 0.41 +0.3 187,780 + GFF878 0.43 +0.1 187,780 + GFF878 0.43 -0.5 187,781 - GFF878 0.44 -2.8 187,837 + GFF878 0.58 -2.0 187,837 + GFF878 0.58 -3.8 187,837 + GFF878 0.58 -4.2 187,837 + GFF878 0.58 +0.5 187,837 + GFF878 0.58 +1.8 187,838 - GFF878 0.58 -0.8 187,838 - GFF878 0.58 -0.5 187,838 - GFF878 0.58 -3.3 187,838 - GFF878 0.58 -3.6 188,212 + -2.2 188,212 + -0.7 188,228 - -0.0
Or see this region's nucleotide sequence