Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF870 and GFF871 are separated by 20 nucleotides GFF871 and GFF872 overlap by 4 nucleotides GFF872 and GFF873 overlap by 4 nucleotides
GFF870 - TonB-dependent receptor, at 178,388 to 180,517
GFF870
GFF871 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 180,538 to 181,431
GFF871
GFF872 - Hemin ABC transporter, permease protein, at 181,428 to 182,420
GFF872
GFF873 - KEGG: iron complex transport system ATP-binding protein , at 182,417 to 183,151
GFF873
Position (kb) 180
181
182 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 179.538 kb on - strand, within GFF870 at 179.538 kb on - strand, within GFF870 at 179.538 kb on - strand, within GFF870 at 179.538 kb on - strand, within GFF870 at 179.630 kb on + strand, within GFF870 at 179.630 kb on + strand, within GFF870 at 179.631 kb on - strand, within GFF870 at 180.113 kb on + strand, within GFF870 at 180.122 kb on + strand, within GFF870 at 180.122 kb on + strand, within GFF870 at 180.122 kb on + strand, within GFF870 at 180.161 kb on + strand, within GFF870 at 180.161 kb on + strand, within GFF870 at 180.161 kb on + strand, within GFF870 at 180.162 kb on - strand, within GFF870 at 180.287 kb on + strand, within GFF870 at 180.287 kb on + strand, within GFF870 at 180.287 kb on + strand, within GFF870 at 180.287 kb on + strand, within GFF870 at 180.288 kb on - strand, within GFF870 at 180.288 kb on - strand, within GFF870 at 180.288 kb on - strand, within GFF870 at 180.371 kb on + strand at 180.372 kb on - strand at 180.372 kb on - strand at 180.372 kb on - strand at 180.428 kb on + strand at 180.428 kb on + strand at 180.429 kb on - strand at 180.429 kb on - strand at 180.429 kb on - strand at 180.429 kb on - strand at 180.431 kb on + strand at 180.431 kb on + strand at 180.431 kb on + strand at 180.432 kb on - strand at 180.506 kb on + strand at 180.507 kb on - strand at 180.507 kb on - strand at 180.802 kb on + strand, within GFF871 at 180.863 kb on - strand, within GFF871 at 181.075 kb on + strand, within GFF871 at 181.075 kb on + strand, within GFF871 at 181.076 kb on - strand, within GFF871 at 181.132 kb on + strand, within GFF871 at 181.132 kb on + strand, within GFF871 at 181.396 kb on + strand at 181.396 kb on + strand at 181.688 kb on + strand, within GFF872 at 181.689 kb on + strand, within GFF872 at 181.690 kb on - strand, within GFF872 at 181.929 kb on + strand, within GFF872
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 179,538 - GFF870 0.54 +1.0 179,538 - GFF870 0.54 +2.9 179,538 - GFF870 0.54 -1.0 179,538 - GFF870 0.54 +0.5 179,630 + GFF870 0.58 +0.2 179,630 + GFF870 0.58 +0.8 179,631 - GFF870 0.58 -2.5 180,113 + GFF870 0.81 -0.3 180,122 + GFF870 0.81 +0.7 180,122 + GFF870 0.81 -1.1 180,122 + GFF870 0.81 -0.9 180,161 + GFF870 0.83 +1.3 180,161 + GFF870 0.83 +1.2 180,161 + GFF870 0.83 +0.5 180,162 - GFF870 0.83 +0.6 180,287 + GFF870 0.89 +0.4 180,287 + GFF870 0.89 +0.9 180,287 + GFF870 0.89 +1.1 180,287 + GFF870 0.89 +1.3 180,288 - GFF870 0.89 +0.8 180,288 - GFF870 0.89 -2.8 180,288 - GFF870 0.89 +2.6 180,371 + -3.9 180,372 - -0.9 180,372 - +2.1 180,372 - -2.8 180,428 + -3.7 180,428 + -2.6 180,429 - -1.1 180,429 - -1.8 180,429 - -1.1 180,429 - -0.9 180,431 + +0.5 180,431 + -1.1 180,431 + +1.1 180,432 - -1.5 180,506 + +1.2 180,507 - -2.6 180,507 - +5.1 180,802 + GFF871 0.30 -1.8 180,863 - GFF871 0.36 -0.7 181,075 + GFF871 0.60 -0.6 181,075 + GFF871 0.60 +0.5 181,076 - GFF871 0.60 +1.9 181,132 + GFF871 0.66 -0.6 181,132 + GFF871 0.66 -1.8 181,396 + +0.1 181,396 + -2.4 181,688 + GFF872 0.26 -0.9 181,689 + GFF872 0.26 -0.0 181,690 - GFF872 0.26 -1.3 181,929 + GFF872 0.50 -0.4
Or see this region's nucleotide sequence