Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF80 and GFF81 are separated by 137 nucleotides GFF81 and GFF82 are separated by 8 nucleotides GFF82 and GFF83 overlap by 4 nucleotides
GFF80 - no description, at 96,512 to 98,155
GFF80
GFF81 - Bll6900 protein, at 98,293 to 98,895
GFF81
GFF82 - Alkylhydroperoxidase AhpD domain protein, at 98,904 to 99,557
GFF82
GFF83 - Alkanal monooxygenase alpha chain (EC 1.14.14.3), at 99,554 to 100,615
GFF83
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 98.109 kb on + strand at 98.110 kb on - strand at 98.110 kb on - strand at 98.146 kb on + strand at 98.146 kb on + strand at 98.147 kb on - strand at 98.147 kb on - strand at 98.189 kb on + strand at 98.190 kb on - strand at 98.582 kb on + strand, within GFF81 at 98.582 kb on + strand, within GFF81 at 98.582 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.729 kb on + strand, within GFF81 at 98.730 kb on - strand, within GFF81 at 98.867 kb on + strand at 98.867 kb on + strand at 98.868 kb on - strand at 99.151 kb on + strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.197 kb on - strand, within GFF82 at 99.295 kb on + strand, within GFF82 at 99.295 kb on + strand, within GFF82 at 99.295 kb on + strand, within GFF82 at 99.296 kb on - strand, within GFF82 at 99.296 kb on - strand, within GFF82 at 99.296 kb on - strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.960 kb on + strand, within GFF83 at 100.134 kb on + strand, within GFF83 at 100.135 kb on - strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.405 kb on - strand, within GFF83 at 100.405 kb on - strand, within GFF83 at 100.405 kb on - strand, within GFF83
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 98,109 + -2.4 98,110 - +1.5 98,110 - -1.0 98,146 + -0.0 98,146 + -1.6 98,147 - +0.9 98,147 - -1.5 98,189 + -1.5 98,190 - +0.5 98,582 + GFF81 0.48 -0.8 98,582 + GFF81 0.48 -0.3 98,582 + GFF81 0.48 +0.3 98,660 + GFF81 0.61 +0.3 98,660 + GFF81 0.61 +0.2 98,660 + GFF81 0.61 +1.0 98,661 - GFF81 0.61 -0.8 98,661 - GFF81 0.61 -3.7 98,661 - GFF81 0.61 +1.5 98,729 + GFF81 0.72 -2.8 98,730 - GFF81 0.72 -0.9 98,867 + +0.3 98,867 + -0.4 98,868 - -0.8 99,151 + GFF82 0.38 -2.0 99,152 - GFF82 0.38 -0.7 99,152 - GFF82 0.38 +0.4 99,152 - GFF82 0.38 -1.9 99,196 + GFF82 0.45 -1.0 99,196 + GFF82 0.45 +0.5 99,196 + GFF82 0.45 -1.5 99,196 + GFF82 0.45 -1.6 99,197 - GFF82 0.45 -0.6 99,295 + GFF82 0.60 +1.2 99,295 + GFF82 0.60 -1.4 99,295 + GFF82 0.60 +1.2 99,296 - GFF82 0.60 -1.3 99,296 - GFF82 0.60 -1.0 99,296 - GFF82 0.60 +0.7 99,412 + GFF82 0.78 -0.0 99,412 + GFF82 0.78 -0.9 99,412 + GFF82 0.78 -0.1 99,412 + GFF82 0.78 -1.0 99,413 - GFF82 0.78 -2.6 99,413 - GFF82 0.78 -2.8 99,413 - GFF82 0.78 -1.3 99,413 - GFF82 0.78 +0.2 99,960 + GFF83 0.38 +1.6 100,134 + GFF83 0.55 +0.7 100,135 - GFF83 0.55 -2.7 100,404 + GFF83 0.80 +1.0 100,404 + GFF83 0.80 -0.9 100,404 + GFF83 0.80 -2.7 100,404 + GFF83 0.80 +0.3 100,404 + GFF83 0.80 +0.5 100,404 + GFF83 0.80 +0.7 100,405 - GFF83 0.80 +0.3 100,405 - GFF83 0.80 +0.5 100,405 - GFF83 0.80 -0.0
Or see this region's nucleotide sequence