Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF779 and GFF780 are separated by 175 nucleotides GFF780 and GFF781 overlap by 8 nucleotides
GFF779 - hypothetical protein, at 60,892 to 62,088
GFF779
GFF780 - no description, at 62,264 to 62,692
GFF780
GFF781 - hypothetical protein, at 62,685 to 64,532
GFF781
Position (kb) 62
63 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 61.342 kb on + strand, within GFF779 at 61.342 kb on + strand, within GFF779 at 61.342 kb on + strand, within GFF779 at 61.343 kb on - strand, within GFF779 at 61.343 kb on - strand, within GFF779 at 61.428 kb on + strand, within GFF779 at 61.429 kb on - strand, within GFF779 at 61.429 kb on - strand, within GFF779 at 61.459 kb on + strand, within GFF779 at 61.510 kb on + strand, within GFF779 at 61.510 kb on + strand, within GFF779 at 61.511 kb on - strand, within GFF779 at 61.530 kb on + strand, within GFF779 at 61.530 kb on + strand, within GFF779 at 61.531 kb on - strand, within GFF779 at 61.544 kb on - strand, within GFF779 at 61.550 kb on + strand, within GFF779 at 61.551 kb on - strand, within GFF779 at 61.551 kb on - strand, within GFF779 at 61.645 kb on + strand, within GFF779 at 61.744 kb on + strand, within GFF779 at 61.744 kb on + strand, within GFF779 at 61.763 kb on - strand, within GFF779 at 61.869 kb on + strand, within GFF779 at 61.869 kb on + strand, within GFF779 at 61.997 kb on - strand at 61.997 kb on - strand at 62.035 kb on + strand at 62.036 kb on - strand at 62.036 kb on - strand at 62.036 kb on - strand at 62.139 kb on + strand at 62.139 kb on + strand at 62.140 kb on - strand at 62.140 kb on - strand at 62.140 kb on - strand at 62.242 kb on + strand at 62.242 kb on + strand at 62.242 kb on + strand at 62.243 kb on - strand at 62.243 kb on - strand at 62.243 kb on - strand at 62.243 kb on - strand at 62.257 kb on - strand at 62.276 kb on + strand at 62.277 kb on - strand at 62.277 kb on - strand at 62.277 kb on - strand at 62.502 kb on - strand, within GFF780 at 62.502 kb on - strand, within GFF780 at 62.546 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.616 kb on - strand, within GFF780 at 62.616 kb on - strand, within GFF780 at 62.616 kb on - strand, within GFF780 at 62.616 kb on - strand, within GFF780 at 62.642 kb on - strand, within GFF780 at 62.690 kb on + strand at 62.690 kb on + strand at 62.691 kb on - strand at 62.691 kb on - strand at 62.755 kb on + strand at 63.410 kb on - strand, within GFF781 at 63.559 kb on + strand, within GFF781 at 63.559 kb on + strand, within GFF781 at 63.634 kb on + strand, within GFF781 at 63.640 kb on + strand, within GFF781 at 63.640 kb on + strand, within GFF781 at 63.640 kb on + strand, within GFF781 at 63.641 kb on - strand, within GFF781 at 63.641 kb on - strand, within GFF781 at 63.641 kb on - strand, within GFF781
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 61,342 + GFF779 0.38 -2.1 61,342 + GFF779 0.38 -1.6 61,342 + GFF779 0.38 -0.9 61,343 - GFF779 0.38 -2.3 61,343 - GFF779 0.38 -0.6 61,428 + GFF779 0.45 +0.6 61,429 - GFF779 0.45 -2.0 61,429 - GFF779 0.45 -2.6 61,459 + GFF779 0.47 -0.2 61,510 + GFF779 0.52 +0.1 61,510 + GFF779 0.52 -2.0 61,511 - GFF779 0.52 +0.4 61,530 + GFF779 0.53 -1.3 61,530 + GFF779 0.53 +1.5 61,531 - GFF779 0.53 +1.1 61,544 - GFF779 0.54 -0.5 61,550 + GFF779 0.55 -1.3 61,551 - GFF779 0.55 -2.6 61,551 - GFF779 0.55 +1.4 61,645 + GFF779 0.63 -0.3 61,744 + GFF779 0.71 +1.7 61,744 + GFF779 0.71 -2.0 61,763 - GFF779 0.73 +0.3 61,869 + GFF779 0.82 +0.7 61,869 + GFF779 0.82 +0.1 61,997 - -0.7 61,997 - -3.8 62,035 + -3.7 62,036 - -0.0 62,036 - -0.7 62,036 - -1.8 62,139 + -3.6 62,139 + -1.7 62,140 - -0.2 62,140 - +0.0 62,140 - -1.3 62,242 + +1.2 62,242 + -1.6 62,242 + -0.7 62,243 - -1.9 62,243 - +0.2 62,243 - -2.6 62,243 - +0.1 62,257 - -1.0 62,276 + +0.9 62,277 - -1.6 62,277 - -3.4 62,277 - +0.4 62,502 - GFF780 0.55 -1.1 62,502 - GFF780 0.55 +0.2 62,546 + GFF780 0.66 -3.0 62,615 + GFF780 0.82 -1.2 62,615 + GFF780 0.82 +0.8 62,615 + GFF780 0.82 -2.7 62,615 + GFF780 0.82 -1.9 62,615 + GFF780 0.82 -1.9 62,616 - GFF780 0.82 +0.2 62,616 - GFF780 0.82 +0.1 62,616 - GFF780 0.82 -1.6 62,616 - GFF780 0.82 -2.1 62,642 - GFF780 0.88 -2.4 62,690 + +1.1 62,690 + -2.6 62,691 - -1.1 62,691 - +0.6 62,755 + +1.1 63,410 - GFF781 0.39 -0.4 63,559 + GFF781 0.47 -1.4 63,559 + GFF781 0.47 -1.3 63,634 + GFF781 0.51 -2.6 63,640 + GFF781 0.52 -0.3 63,640 + GFF781 0.52 -3.9 63,640 + GFF781 0.52 -1.3 63,641 - GFF781 0.52 +1.0 63,641 - GFF781 0.52 -0.1 63,641 - GFF781 0.52 +0.0
Or see this region's nucleotide sequence