Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF768 and GFF769 are separated by 33 nucleotides GFF769 and GFF770 are separated by 41 nucleotides
GFF768 - Trehalose synthase (EC 5.4.99.16), at 34,485 to 37,829
GFF768
GFF769 - Conserved TM helix, at 37,863 to 38,645
GFF769
GFF770 - Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196), at 38,687 to 40,849
GFF770
Position (kb) 37
38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 36.909 kb on + strand, within GFF768 at 36.910 kb on - strand, within GFF768 at 36.957 kb on + strand, within GFF768 at 36.957 kb on + strand, within GFF768 at 36.957 kb on + strand, within GFF768 at 36.957 kb on + strand, within GFF768 at 36.958 kb on - strand, within GFF768 at 36.958 kb on - strand, within GFF768 at 36.958 kb on - strand, within GFF768 at 36.987 kb on + strand, within GFF768 at 36.988 kb on - strand, within GFF768 at 37.402 kb on - strand, within GFF768 at 37.542 kb on + strand at 37.542 kb on + strand at 37.542 kb on + strand at 37.542 kb on + strand at 37.543 kb on - strand at 37.543 kb on - strand at 37.543 kb on - strand at 37.750 kb on - strand at 37.908 kb on + strand at 37.909 kb on - strand at 37.909 kb on - strand at 38.118 kb on + strand, within GFF769 at 38.175 kb on + strand, within GFF769 at 38.175 kb on + strand, within GFF769 at 38.175 kb on + strand, within GFF769 at 38.175 kb on + strand, within GFF769 at 38.175 kb on + strand, within GFF769 at 38.175 kb on + strand, within GFF769 at 38.292 kb on + strand, within GFF769 at 38.603 kb on + strand at 38.895 kb on - strand at 38.924 kb on + strand, within GFF770 at 38.925 kb on - strand, within GFF770 at 38.925 kb on - strand, within GFF770 at 38.949 kb on - strand, within GFF770 at 39.003 kb on - strand, within GFF770 at 39.003 kb on - strand, within GFF770 at 39.054 kb on - strand, within GFF770 at 39.197 kb on + strand, within GFF770 at 39.197 kb on + strand, within GFF770 at 39.198 kb on - strand, within GFF770 at 39.198 kb on - strand, within GFF770 at 39.263 kb on + strand, within GFF770 at 39.296 kb on + strand, within GFF770 at 39.297 kb on - strand, within GFF770 at 39.389 kb on + strand, within GFF770 at 39.389 kb on + strand, within GFF770 at 39.389 kb on + strand, within GFF770 at 39.390 kb on - strand, within GFF770 at 39.390 kb on - strand, within GFF770 at 39.390 kb on - strand, within GFF770 at 39.399 kb on - strand, within GFF770 at 39.434 kb on + strand, within GFF770 at 39.434 kb on + strand, within GFF770 at 39.435 kb on - strand, within GFF770 at 39.521 kb on + strand, within GFF770 at 39.521 kb on + strand, within GFF770 at 39.522 kb on - strand, within GFF770 at 39.522 kb on - strand, within GFF770 at 39.522 kb on - strand, within GFF770 at 39.590 kb on + strand, within GFF770 at 39.590 kb on + strand, within GFF770 at 39.591 kb on - strand, within GFF770 at 39.591 kb on - strand, within GFF770 at 39.591 kb on - strand, within GFF770 at 39.591 kb on - strand, within GFF770 at 39.591 kb on - strand, within GFF770 at 39.591 kb on - strand, within GFF770 at 39.594 kb on - strand, within GFF770 at 39.624 kb on - strand, within GFF770 at 39.624 kb on - strand, within GFF770
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 36,909 + GFF768 0.72 -0.6 36,910 - GFF768 0.72 -0.9 36,957 + GFF768 0.74 -3.0 36,957 + GFF768 0.74 +0.7 36,957 + GFF768 0.74 +0.7 36,957 + GFF768 0.74 +1.4 36,958 - GFF768 0.74 -1.1 36,958 - GFF768 0.74 -1.3 36,958 - GFF768 0.74 +0.1 36,987 + GFF768 0.75 -1.5 36,988 - GFF768 0.75 -1.6 37,402 - GFF768 0.87 -2.2 37,542 + -1.9 37,542 + -0.5 37,542 + +1.3 37,542 + -1.3 37,543 - -4.2 37,543 - -0.3 37,543 - -1.1 37,750 - +0.2 37,908 + -3.0 37,909 - -2.3 37,909 - -0.2 38,118 + GFF769 0.33 -2.7 38,175 + GFF769 0.40 -2.5 38,175 + GFF769 0.40 -3.7 38,175 + GFF769 0.40 -1.6 38,175 + GFF769 0.40 -2.0 38,175 + GFF769 0.40 -0.1 38,175 + GFF769 0.40 -1.1 38,292 + GFF769 0.55 -2.7 38,603 + -0.3 38,895 - +0.1 38,924 + GFF770 0.11 -2.0 38,925 - GFF770 0.11 -0.6 38,925 - GFF770 0.11 -3.2 38,949 - GFF770 0.12 +0.6 39,003 - GFF770 0.15 +1.1 39,003 - GFF770 0.15 -2.8 39,054 - GFF770 0.17 -1.4 39,197 + GFF770 0.24 +1.9 39,197 + GFF770 0.24 +2.2 39,198 - GFF770 0.24 +0.6 39,198 - GFF770 0.24 +0.4 39,263 + GFF770 0.27 -2.8 39,296 + GFF770 0.28 -0.3 39,297 - GFF770 0.28 -0.3 39,389 + GFF770 0.32 -2.7 39,389 + GFF770 0.32 +1.7 39,389 + GFF770 0.32 -0.6 39,390 - GFF770 0.33 -0.3 39,390 - GFF770 0.33 +1.2 39,390 - GFF770 0.33 +1.4 39,399 - GFF770 0.33 -0.6 39,434 + GFF770 0.35 -0.4 39,434 + GFF770 0.35 -2.5 39,435 - GFF770 0.35 -0.9 39,521 + GFF770 0.39 +0.9 39,521 + GFF770 0.39 -2.8 39,522 - GFF770 0.39 +4.2 39,522 - GFF770 0.39 +0.8 39,522 - GFF770 0.39 +0.3 39,590 + GFF770 0.42 +1.7 39,590 + GFF770 0.42 -0.2 39,591 - GFF770 0.42 -2.2 39,591 - GFF770 0.42 +1.3 39,591 - GFF770 0.42 -0.9 39,591 - GFF770 0.42 -0.3 39,591 - GFF770 0.42 -2.3 39,591 - GFF770 0.42 +1.9 39,594 - GFF770 0.42 -0.6 39,624 - GFF770 0.43 +0.4 39,624 - GFF770 0.43 -4.2
Or see this region's nucleotide sequence