Strain Fitness in Variovorax sp. SCN45 around GFF7377

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
6,277	+		GFF7376	0.33	-2.1
6,277	+		GFF7376	0.33	+0.1
6,277	+		GFF7376	0.33	-1.3
6,313	+		GFF7376	0.37	+0.2
6,313	+		GFF7376	0.37	+2.2
6,313	+		GFF7376	0.37	-0.7
6,313	+		GFF7376	0.37	+0.5
6,313	+		GFF7376	0.37	+1.7
6,313	+		GFF7376	0.37	+0.5
6,313	+		GFF7376	0.37	+2.8
6,313	+		GFF7376	0.37	+2.8
6,314	-		GFF7376	0.37	-1.1
6,314	-		GFF7376	0.37	-1.2
6,314	-		GFF7376	0.37	+0.5
6,314	-		GFF7376	0.37	-2.5
6,314	-		GFF7376	0.37	+1.4
6,314	-		GFF7376	0.37	-1.1
6,314	-		GFF7376	0.37	+0.8
6,376	+		GFF7376	0.44	-2.9
6,376	+		GFF7376	0.44	-0.8
6,376	+		GFF7376	0.44	-3.2
6,376	+		GFF7376	0.44	-0.3
6,376	+		GFF7376	0.44	-1.1
6,376	+		GFF7376	0.44	-0.0
6,376	+		GFF7376	0.44	+0.4
6,376	+		GFF7376	0.44	-1.5
6,376	+		GFF7376	0.44	-1.8
6,376	+		GFF7376	0.44	+0.8
6,377	-		GFF7376	0.44	+2.5
6,377	-		GFF7376	0.44	-0.8
6,377	-		GFF7376	0.44	+2.6
6,377	-		GFF7376	0.44	-1.2
6,377	-		GFF7376	0.44	+3.4
6,377	-		GFF7376	0.44	-1.1
6,377	-		GFF7376	0.44	+1.1
6,391	+		GFF7376	0.46	-2.9
6,392	-		GFF7376	0.46	-0.2
6,392	-		GFF7376	0.46	-1.3
6,392	-		GFF7376	0.46	+0.2
6,406	+		GFF7376	0.47	-3.9
6,406	+		GFF7376	0.47	+2.8
6,407	-		GFF7376	0.48	-1.1
6,407	-		GFF7376	0.48	-1.5
6,862	+				+1.1
6,862	+				-0.6
6,862	+				-0.8
6,863	-				-2.5
6,939	-				-1.3
6,971	+				-0.7
6,971	+				-2.9
7,466	+		GFF7377	0.28	-2.1
7,466	+		GFF7377	0.28	+1.2
7,466	+		GFF7377	0.28	-2.0
7,466	+		GFF7377	0.28	-0.2
7,466	+		GFF7377	0.28	-1.7
7,466	+		GFF7377	0.28	+1.0
7,467	-		GFF7377	0.28	+0.5
7,467	-		GFF7377	0.28	-2.8
7,467	-		GFF7377	0.28	-0.5
7,467	-		GFF7377	0.28	-2.5
7,467	-		GFF7377	0.28	-0.2
7,575	-		GFF7377	0.35	-1.4
7,603	+		GFF7377	0.37	+3.6
7,603	+		GFF7377	0.37	-0.4
7,603	+		GFF7377	0.37	-0.0
7,603	+		GFF7377	0.37	-2.6
7,603	+		GFF7377	0.37	-2.0
7,603	+		GFF7377	0.37	-1.5
7,604	-		GFF7377	0.37	-0.0
7,604	-		GFF7377	0.37	-2.4
7,766	+		GFF7377	0.48	+0.5
7,766	+		GFF7377	0.48	-3.0
7,766	+		GFF7377	0.48	-2.3
7,766	+		GFF7377	0.48	-2.6
7,766	+		GFF7377	0.48	-2.1
7,766	+		GFF7377	0.48	+0.2
7,767	-		GFF7377	0.48	-3.2
7,767	-		GFF7377	0.48	-0.9
7,804	+		GFF7377	0.50	-2.5
8,198	+		GFF7377	0.76	-1.4
8,198	+		GFF7377	0.76	-1.3
8,199	-		GFF7377	0.76	-1.0
8,199	-		GFF7377	0.76	-1.6
8,199	-		GFF7377	0.76	-0.5
8,199	-		GFF7377	0.76	-0.0
8,199	-		GFF7377	0.76	-1.1
8,199	-		GFF7377	0.76	-2.5
8,474	+				-1.3
8,475	-				+0.6
8,475	-				-0.2
8,475	-				-1.0
8,554	+				-2.5
8,554	+				-2.2
8,554	+				-0.6
8,554	+				-0.2
8,554	+				-1.2
8,554	+				-0.7
8,555	-				+1.8
8,555	-				-1.8
8,555	-				+0.7
8,638	+		GFF7378	0.20	+0.9
8,740	+		GFF7378	0.46	-0.4
9,111	+		GFF7379	0.14	-0.8
9,111	+		GFF7379	0.14	-2.1
9,111	+		GFF7379	0.14	-0.3
9,111	+		GFF7379	0.14	-3.6
9,111	+		GFF7379	0.14	-0.4
9,111	+		GFF7379	0.14	-2.3
9,111	+		GFF7379	0.14	-2.3
9,111	+		GFF7379	0.14	-0.5
9,111	+		GFF7379	0.14	-0.9
9,112	-		GFF7379	0.14	-0.0
9,112	-		GFF7379	0.14	-0.0
9,112	-		GFF7379	0.14	-2.8
9,112	-		GFF7379	0.14	-2.6
9,112	-		GFF7379	0.14	-0.2
9,112	-		GFF7379	0.14	-0.9
9,112	-		GFF7379	0.14	-3.9
9,112	-		GFF7379	0.14	-1.0
9,112	-		GFF7379	0.14	-1.0
9,112	-		GFF7379	0.14	+2.5
9,112	-		GFF7379	0.14	-1.5
9,316	-		GFF7379	0.32	-0.9
9,316	-		GFF7379	0.32	+1.0
9,316	-		GFF7379	0.32	-0.0
9,316	-		GFF7379	0.32	+0.5
9,316	-		GFF7379	0.32	+0.2
9,316	-		GFF7379	0.32	-1.9
9,316	-		GFF7379	0.32	-0.1
9,316	-		GFF7379	0.32	+0.2
9,390	+		GFF7379	0.38	-1.1
9,390	+		GFF7379	0.38	-3.5
9,390	+		GFF7379	0.38	-2.0
9,390	+		GFF7379	0.38	+1.5
9,390	+		GFF7379	0.38	+0.3
9,390	+		GFF7379	0.38	-0.7
9,390	+		GFF7379	0.38	+4.8
9,391	-		GFF7379	0.38	-0.0
9,391	-		GFF7379	0.38	-3.4
9,391	-		GFF7379	0.38	+0.5
9,391	-		GFF7379	0.38	+1.2
9,391	-		GFF7379	0.38	+0.8
9,391	-		GFF7379	0.38	-1.8
9,391	-		GFF7379	0.38	-0.0
9,391	-		GFF7379	0.38	-1.5
9,528	+		GFF7379	0.50	-0.2
9,529	-		GFF7379	0.50	-3.4
9,529	-		GFF7379	0.50	-2.1
9,529	-		GFF7379	0.50	-2.4