Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7288 and GFF7289 are separated by 161 nucleotides GFF7289 and GFF7290 overlap by 8 nucleotides GFF7290 and GFF7291 are separated by 65 nucleotides
GFF7288 - Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2), at 6,099 to 7,730
GFF7288
GFF7289 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 7,892 to 8,629
GFF7289
GFF7290 - Putative transmembrane protein, at 8,622 to 9,380
GFF7290
GFF7291 - Magnesium and cobalt transport protein CorA, at 9,446 to 10,432
GFF7291
Position (kb) 7
8
9 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 6.996 kb on + strand, within GFF7288 at 6.996 kb on + strand, within GFF7288 at 6.997 kb on - strand, within GFF7288 at 7.005 kb on + strand, within GFF7288 at 7.005 kb on + strand, within GFF7288 at 7.005 kb on + strand, within GFF7288 at 7.005 kb on + strand, within GFF7288 at 7.006 kb on - strand, within GFF7288 at 7.006 kb on - strand, within GFF7288 at 7.006 kb on - strand, within GFF7288 at 7.095 kb on + strand, within GFF7288 at 7.096 kb on - strand, within GFF7288 at 7.149 kb on + strand, within GFF7288 at 7.149 kb on + strand, within GFF7288 at 7.150 kb on - strand, within GFF7288 at 7.177 kb on - strand, within GFF7288 at 7.270 kb on - strand, within GFF7288 at 7.513 kb on - strand, within GFF7288 at 7.513 kb on - strand, within GFF7288 at 7.513 kb on - strand, within GFF7288 at 7.513 kb on - strand, within GFF7288 at 7.522 kb on - strand, within GFF7288 at 7.581 kb on + strand at 7.673 kb on - strand at 7.729 kb on - strand at 8.477 kb on + strand, within GFF7289 at 8.477 kb on + strand, within GFF7289 at 8.478 kb on - strand, within GFF7289 at 8.577 kb on - strand at 8.658 kb on - strand at 8.731 kb on + strand, within GFF7290 at 8.731 kb on + strand, within GFF7290 at 8.731 kb on + strand, within GFF7290 at 8.732 kb on - strand, within GFF7290 at 8.858 kb on - strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.256 kb on + strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.257 kb on - strand, within GFF7290 at 9.418 kb on + strand at 9.418 kb on + strand at 9.418 kb on + strand at 9.418 kb on + strand at 9.419 kb on - strand at 9.474 kb on + strand at 9.474 kb on + strand at 9.474 kb on + strand at 9.474 kb on + strand at 9.474 kb on + strand at 9.475 kb on - strand at 9.475 kb on - strand at 9.520 kb on - strand at 9.525 kb on + strand at 9.573 kb on + strand, within GFF7291 at 9.573 kb on + strand, within GFF7291 at 9.573 kb on + strand, within GFF7291 at 9.573 kb on + strand, within GFF7291 at 9.573 kb on + strand, within GFF7291 at 9.573 kb on + strand, within GFF7291
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 6,996 + GFF7288 0.55 -0.1 6,996 + GFF7288 0.55 -0.3 6,997 - GFF7288 0.55 -0.6 7,005 + GFF7288 0.56 +0.7 7,005 + GFF7288 0.56 +1.2 7,005 + GFF7288 0.56 +2.3 7,005 + GFF7288 0.56 +0.3 7,006 - GFF7288 0.56 -0.4 7,006 - GFF7288 0.56 -2.0 7,006 - GFF7288 0.56 -0.3 7,095 + GFF7288 0.61 -0.3 7,096 - GFF7288 0.61 +0.7 7,149 + GFF7288 0.64 -2.1 7,149 + GFF7288 0.64 +1.4 7,150 - GFF7288 0.64 -1.9 7,177 - GFF7288 0.66 -0.4 7,270 - GFF7288 0.72 -1.4 7,513 - GFF7288 0.87 +0.4 7,513 - GFF7288 0.87 +0.4 7,513 - GFF7288 0.87 +2.6 7,513 - GFF7288 0.87 -2.1 7,522 - GFF7288 0.87 -0.4 7,581 + +1.2 7,673 - -1.4 7,729 - -0.5 8,477 + GFF7289 0.79 -1.3 8,477 + GFF7289 0.79 -0.9 8,478 - GFF7289 0.79 -1.9 8,577 - +1.3 8,658 - -1.8 8,731 + GFF7290 0.14 +0.9 8,731 + GFF7290 0.14 +0.3 8,731 + GFF7290 0.14 -1.1 8,732 - GFF7290 0.14 +0.8 8,858 - GFF7290 0.31 -1.6 9,256 + GFF7290 0.84 -0.1 9,256 + GFF7290 0.84 -1.0 9,256 + GFF7290 0.84 -1.6 9,256 + GFF7290 0.84 -0.5 9,256 + GFF7290 0.84 +0.3 9,256 + GFF7290 0.84 +1.4 9,256 + GFF7290 0.84 +1.6 9,256 + GFF7290 0.84 -3.3 9,256 + GFF7290 0.84 +2.2 9,256 + GFF7290 0.84 -2.0 9,256 + GFF7290 0.84 +1.6 9,256 + GFF7290 0.84 +2.5 9,256 + GFF7290 0.84 -1.8 9,256 + GFF7290 0.84 -0.3 9,257 - GFF7290 0.84 -0.6 9,257 - GFF7290 0.84 -0.0 9,257 - GFF7290 0.84 +0.3 9,257 - GFF7290 0.84 +0.5 9,257 - GFF7290 0.84 -0.3 9,257 - GFF7290 0.84 +0.6 9,257 - GFF7290 0.84 -0.9 9,257 - GFF7290 0.84 -1.1 9,257 - GFF7290 0.84 +2.3 9,257 - GFF7290 0.84 -0.0 9,257 - GFF7290 0.84 +0.7 9,257 - GFF7290 0.84 -1.8 9,257 - GFF7290 0.84 -0.0 9,257 - GFF7290 0.84 +1.4 9,257 - GFF7290 0.84 -2.5 9,257 - GFF7290 0.84 +0.1 9,418 + -0.5 9,418 + -0.4 9,418 + -3.1 9,418 + +1.3 9,419 - -1.0 9,474 + -0.9 9,474 + -1.4 9,474 + -0.7 9,474 + +0.5 9,474 + -1.3 9,475 - -1.4 9,475 - -1.4 9,520 - +0.7 9,525 + -1.1 9,573 + GFF7291 0.13 -1.5 9,573 + GFF7291 0.13 -1.7 9,573 + GFF7291 0.13 -2.1 9,573 + GFF7291 0.13 -1.4 9,573 + GFF7291 0.13 -2.3 9,573 + GFF7291 0.13 -0.7
Or see this region's nucleotide sequence