Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7285 and GFF7286 are separated by 131 nucleotides GFF7286 and GFF7287 overlap by 4 nucleotides
GFF7285 - Dipeptide ABC transporter, permease protein DppC (TC 3.A.1.5.2), at 2,966 to 3,871
GFF7285
GFF7286 - Dipeptide ABC transporter, ATP-binding protein DppD (TC 3.A.1.5.2), at 4,003 to 5,031
GFF7286
GFF7287 - Dipeptide ABC transporter, ATP-binding protein DppF (TC 3.A.1.5.2), at 5,028 to 6,062
GFF7287
Position (kb) 4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3.204 kb on - strand, within GFF7285 at 3.254 kb on + strand, within GFF7285 at 3.254 kb on + strand, within GFF7285 at 3.254 kb on + strand, within GFF7285 at 3.255 kb on - strand, within GFF7285 at 3.255 kb on - strand, within GFF7285 at 3.255 kb on - strand, within GFF7285 at 3.255 kb on - strand, within GFF7285 at 3.255 kb on - strand, within GFF7285 at 3.494 kb on + strand, within GFF7285 at 3.494 kb on + strand, within GFF7285 at 3.494 kb on + strand, within GFF7285 at 3.494 kb on + strand, within GFF7285 at 3.495 kb on - strand, within GFF7285 at 3.495 kb on - strand, within GFF7285 at 3.542 kb on + strand, within GFF7285 at 3.542 kb on + strand, within GFF7285 at 3.542 kb on + strand, within GFF7285 at 3.542 kb on + strand, within GFF7285 at 3.543 kb on - strand, within GFF7285 at 3.543 kb on - strand, within GFF7285 at 3.870 kb on - strand at 4.001 kb on - strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.003 kb on - strand at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.685 kb on - strand, within GFF7286 at 4.685 kb on - strand, within GFF7286 at 4.747 kb on + strand, within GFF7286 at 4.876 kb on + strand, within GFF7286 at 4.876 kb on + strand, within GFF7286 at 4.876 kb on + strand, within GFF7286 at 4.877 kb on - strand, within GFF7286 at 4.877 kb on - strand, within GFF7286 at 4.877 kb on - strand, within GFF7286 at 5.082 kb on + strand at 5.082 kb on + strand at 5.082 kb on + strand at 5.082 kb on + strand at 5.083 kb on - strand at 5.083 kb on - strand at 5.282 kb on + strand, within GFF7287 at 5.283 kb on - strand, within GFF7287 at 5.478 kb on + strand, within GFF7287 at 5.661 kb on + strand, within GFF7287 at 5.724 kb on + strand, within GFF7287 at 5.724 kb on + strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.787 kb on + strand, within GFF7287 at 5.787 kb on + strand, within GFF7287 at 5.979 kb on + strand at 5.979 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 3,204 - GFF7285 0.26 +2.2 3,254 + GFF7285 0.32 +1.0 3,254 + GFF7285 0.32 +0.7 3,254 + GFF7285 0.32 -0.0 3,255 - GFF7285 0.32 +1.8 3,255 - GFF7285 0.32 -0.7 3,255 - GFF7285 0.32 -0.0 3,255 - GFF7285 0.32 +1.7 3,255 - GFF7285 0.32 +0.9 3,494 + GFF7285 0.58 +0.3 3,494 + GFF7285 0.58 -2.2 3,494 + GFF7285 0.58 +0.5 3,494 + GFF7285 0.58 +0.1 3,495 - GFF7285 0.58 +0.7 3,495 - GFF7285 0.58 +2.7 3,542 + GFF7285 0.64 -1.1 3,542 + GFF7285 0.64 -1.3 3,542 + GFF7285 0.64 +1.5 3,542 + GFF7285 0.64 -1.3 3,543 - GFF7285 0.64 +0.3 3,543 - GFF7285 0.64 -2.2 3,870 - -0.0 4,001 - +0.5 4,002 + -1.0 4,002 + +0.3 4,002 + +1.9 4,002 + -1.4 4,002 + -1.0 4,003 - -2.4 4,003 - -2.1 4,003 - -0.6 4,003 - -1.6 4,003 - -0.3 4,003 - -2.9 4,684 + GFF7286 0.66 -0.3 4,684 + GFF7286 0.66 -0.5 4,684 + GFF7286 0.66 +1.0 4,684 + GFF7286 0.66 -0.3 4,684 + GFF7286 0.66 -0.7 4,684 + GFF7286 0.66 +0.0 4,685 - GFF7286 0.66 +1.2 4,685 - GFF7286 0.66 -1.0 4,747 + GFF7286 0.72 -1.9 4,876 + GFF7286 0.85 -2.7 4,876 + GFF7286 0.85 -1.8 4,876 + GFF7286 0.85 -0.3 4,877 - GFF7286 0.85 +2.3 4,877 - GFF7286 0.85 -2.6 4,877 - GFF7286 0.85 -1.4 5,082 + +0.3 5,082 + +0.7 5,082 + +3.0 5,082 + -0.7 5,083 - -1.6 5,083 - +2.4 5,282 + GFF7287 0.25 +0.7 5,283 - GFF7287 0.25 -1.4 5,478 + GFF7287 0.43 -0.6 5,661 + GFF7287 0.61 -2.4 5,724 + GFF7287 0.67 -0.3 5,724 + GFF7287 0.67 -0.1 5,725 - GFF7287 0.67 +0.1 5,725 - GFF7287 0.67 +0.0 5,725 - GFF7287 0.67 +2.4 5,725 - GFF7287 0.67 -1.9 5,787 + GFF7287 0.73 -0.2 5,787 + GFF7287 0.73 -2.8 5,979 + -1.1 5,979 + +2.3
Or see this region's nucleotide sequence